View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9782_low_1 (Length: 569)
Name: NF9782_low_1
Description: NF9782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9782_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 35 - 562
Target Start/End: Original strand, 6312783 - 6313310
Alignment:
| Q |
35 |
tgaaattgaatatgcaaagaaatgcataaaatgtgtataacacaagaagatacaacttagattttcattgcaataacaataaagagggtaatagtgactg |
134 |
Q |
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| T |
6312783 |
tgaaattgaatatgcaaagaaatgcataaaatgtgtataacacaagaagatacaacttagattttcattgcaataacaataaagagggtaatagtgactg |
6312882 |
T |
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| Q |
135 |
ttacatttcaatcaaacaagaagaaaaatagcatagatagataaatgaataaacatactagaagtaaagtaaacaacctattcactttcannnnnnnnnn |
234 |
Q |
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| T |
6312883 |
ttacatttcaatcaaacaagaagaaaaatagcatagatagataaatgaataaacatactagaagtaaagtaaacaacctattcactttcaatatatatat |
6312982 |
T |
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| Q |
235 |
nngtcaaaaaagtagagtcaactattggaatcccaaacgcgtacacccaaaaagaaaggccaaatatcatgtgccaacattcagaattaattttgaggta |
334 |
Q |
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| T |
6312983 |
atgtcaaaaaagtagagtcaactattggaatcccaaacgcgtacacccaaaaagaaaggccaaatatcatgtgccaacattcagaattaattttgaggta |
6313082 |
T |
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| Q |
335 |
tttgcttcatttgccataagatttttcaaaaggcccaagtctattatcagccagccttgaattgtacattgctttcttgtactccaaccacgtgaactct |
434 |
Q |
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| T |
6313083 |
tttgcttcatttgccataagatttttcaaaaggcccaagtctataatcagccagccttgaattgtacattgctttcttgtactccaaccacgtgaactct |
6313182 |
T |
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| Q |
435 |
ttgtacaaactttcttcnnnnnnnaacattaaagaaggtaaaggcactatcttttcactcaagggtggtcctccaaagtatatcatcgacaaccttgact |
534 |
Q |
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| T |
6313183 |
ttgtacaaactttcttctttttttaacattaaagaaggtaaaggcactatcttttcactcaagggtggtcctccaaagtatatcatcgacaaccttgact |
6313282 |
T |
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| Q |
535 |
ttgttgtgtcagccaaaaccctatgctt |
562 |
Q |
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| T |
6313283 |
ttgttgtgtcagccaaaaccctatgctt |
6313310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 468 - 562
Target Start/End: Complemental strand, 38546538 - 38546444
Alignment:
| Q |
468 |
gaaggtaaaggcactatcttttcactcaagggtggtcctccaaagtatatcatcgacaaccttgactttgttgtgtcagccaaaaccctatgctt |
562 |
Q |
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| T |
38546538 |
gaaggcaaaggtactaacttttcattcaagggtggccctccaaaataaatcattgacaaccttgacatacttgtgtcagtcaataccctatgctt |
38546444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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