View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9782_low_10 (Length: 306)
Name: NF9782_low_10
Description: NF9782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9782_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 2032143 - 2032381
Alignment:
| Q |
10 |
agtagcataggacacaatttagatccgtaattaataaaatttaatnnnnnnnnncttatacaaaagtctaatacttttaaaggaaaatacattaataatt |
109 |
Q |
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| T |
2032143 |
agtagcataggacacaatttagatccgtaattaataaaatttaataaaaaaaaacttatacaaaagtctaatacttttaaaggaaaatacattaataatt |
2032242 |
T |
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| Q |
110 |
caacattaattaattataacctctacttagaaaaagatatttgtgattaaaataaaaattgtatttgtgctagtaatcttatcgtgtgagttaattc-tt |
208 |
Q |
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| T |
2032243 |
caacattaatt---tataacctctacttagaaaaagatatttgtgattaaaataaaaattttatttgtgctagtaatcttatcgtgtaagttaattcttt |
2032339 |
T |
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| Q |
209 |
ttttgtaataatctctattaatttcataaatgattaaactcc |
250 |
Q |
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| T |
2032340 |
ttttgtaataatctctattaatttcataaatgattaaactcc |
2032381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 261 - 292
Target Start/End: Original strand, 2032396 - 2032427
Alignment:
| Q |
261 |
ggtacaaaattattaaactcctttattgatgt |
292 |
Q |
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| T |
2032396 |
ggtacaaaattattaaactcctttattgatgt |
2032427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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