View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9782_low_12 (Length: 272)
Name: NF9782_low_12
Description: NF9782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9782_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 87 - 223
Target Start/End: Original strand, 47363495 - 47363631
Alignment:
| Q |
87 |
ttgagttagattgtaagctagtggctgatagcatagttgataggcccaataatcagttggaatttggtaatattatgtctcgttgtagatcatttttgtg |
186 |
Q |
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| T |
47363495 |
ttgagctagattctaagctagtggctgatagcatagttgataggccgaataatcagttggaatttgataatattatgtctcgttgtagatcatttttgtg |
47363594 |
T |
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| Q |
187 |
tcattttccaaacttataaagaaattgtgtcgcccat |
223 |
Q |
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| T |
47363595 |
tcatttttcaaacttataaagaaattgtgtcgcccat |
47363631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 199
Target Start/End: Complemental strand, 34711638 - 34711561
Alignment:
| Q |
122 |
gttgataggcccaataatcagttggaatttggtaatattatgtctcgttgtagatcatttttgtgtcattttccaaac |
199 |
Q |
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| T |
34711638 |
gttgataggtccaataatcagtcggaatttagtaatattatgtctcgatgtagatcactattgtgtcatgttccaaac |
34711561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 33508409 - 33508590
Alignment:
| Q |
17 |
agcataggcaatggggttgtctgatgccatctcatggttttgatcaattgagattatcgaaggtgctaaattgagttagattgtaagctagtggctgata |
116 |
Q |
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| T |
33508409 |
agcataggcaatgggcttgcgtgacgccatcttatggctt-gatcaattggaactatcaaaggtgc-aaattgagcttgattgtaagttagtagtgggta |
33508506 |
T |
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| Q |
117 |
gcatagttgataggcccaataatcagttggaatttggtaatattatgtctcgttgtagatcatttttgtgtcattttccaaactt |
201 |
Q |
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| T |
33508507 |
tcatatttgataggtccaataatcggtcaaaatttgataatattatgt-ttggtgtagatcactattgtgtcattttctaaactt |
33508590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 130
Target Start/End: Original strand, 1930009 - 1930046
Alignment:
| Q |
93 |
tagattgtaagctagtggctgatagcatagttgatagg |
130 |
Q |
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| T |
1930009 |
tagattgtaagctagtggttgatagcatagttgatagg |
1930046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 159
Target Start/End: Original strand, 8690337 - 8690409
Alignment:
| Q |
87 |
ttgagttagattgtaagctagtggctgatagcatagttgataggcccaataatcagttggaatttggtaatat |
159 |
Q |
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| T |
8690337 |
ttgagctagattgtaagctagtagttgatagcatagttgataggactaatattcaggctgagtttggtaatat |
8690409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 159
Target Start/End: Original strand, 9042206 - 9042278
Alignment:
| Q |
87 |
ttgagttagattgtaagctagtggctgatagcatagttgataggcccaataatcagttggaatttggtaatat |
159 |
Q |
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| T |
9042206 |
ttgagctagattgtaagctagtagttgatagcatagttgataggactaatattcaggctgagtttggtaatat |
9042278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 130
Target Start/End: Complemental strand, 1069095 - 1069058
Alignment:
| Q |
93 |
tagattgtaagctagtggctgatagcatagttgatagg |
130 |
Q |
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| T |
1069095 |
tagattgtaagctagtggatgatagcatagttcatagg |
1069058 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 130
Target Start/End: Original strand, 29370290 - 29370327
Alignment:
| Q |
93 |
tagattgtaagctagtggctgatagcatagttgatagg |
130 |
Q |
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| T |
29370290 |
tagattgtaagctagtggttgatagcataattgatagg |
29370327 |
T |
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