View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9782_low_13 (Length: 268)
Name: NF9782_low_13
Description: NF9782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9782_low_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 35288284 - 35288527
Alignment:
| Q |
18 |
gtctcaatgttacattcgagctattagtgatagagctgtagaatctacaatttctaagaaagaagaggagggagaacagtctcctaaagattggaagatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35288284 |
gtctcaatgttacattcgagctattagtgatagagctgtagaatctacaatttctaagaaagaagaggagggagaacagtctcctaaagattggaagatt |
35288383 |
T |
|
| Q |
118 |
aaaatgctatatgatggagattgtccattatgcatgcgagaggttaatctttgtttcaataacaattaacaagtgtggttgttttgttcataaccacata |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35288384 |
aaaatgctatatgatggagattgtccattatgcatgcgagaggttaatctttgtttcaataacaattaacaagtgtggttgttttgttcataaccacata |
35288483 |
T |
|
| Q |
218 |
attctcatgttatatagttagttagtgaaccttgtttcatctca |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35288484 |
attctcatgttatatagttagttagtgaaccttgtttcatctca |
35288527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University