View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9782_low_15 (Length: 244)
Name: NF9782_low_15
Description: NF9782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9782_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 36184994 - 36184778
Alignment:
| Q |
18 |
caaacacagattggtattgcaataggtctcaattttgatgataagatcgatctatctgaaacatcttgttgcgtgtgttatggtaataacaaaagaatga |
117 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36184994 |
caaacacagattggtattgcaataggtctgaattttgatgataagatcgatctatctgaaacatcttgttgcgtgtgttatggtaataacaaaagaatga |
36184895 |
T |
|
| Q |
118 |
caactgcagaaagagctcttcttctgtgcgctaagataaaggaactgcaaacagtactagttgtattgtgtgatcttcatggtagacttgatttaggtga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36184894 |
caactgcagaaagagctcttcttctgtgcgctaagataaaggaactgcaaacagtactagttgtattgtgtgatcttcatggtagacttgatttaggtga |
36184795 |
T |
|
| Q |
218 |
gattggtatcccctttg |
234 |
Q |
| |
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||||||||||||||||| |
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| T |
36184794 |
gattggtatcccctttg |
36184778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 36208178 - 36207962
Alignment:
| Q |
18 |
caaacacagattggtattgcaataggtctcaattttgatgataagatcgatctatctgaaacatcttgttgcgtgtgttatggtaataacaaaagaatga |
117 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36208178 |
caaacacagattggtattgcaataggtctgaattttgatgataagatcgatctatctgaaacatcttgttgcgtgtgttatggtaataacaaaagaatga |
36208079 |
T |
|
| Q |
118 |
caactgcagaaagagctcttcttctgtgcgctaagataaaggaactgcaaacagtactagttgtattgtgtgatcttcatggtagacttgatttaggtga |
217 |
Q |
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|
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
36208078 |
caactgcagaaagagctcttcttctgtgtgctaagataaagaaactgcaaacagtactagttgtactgtatgatcttcatggtagacttgatttaggtga |
36207979 |
T |
|
| Q |
218 |
gattggtatcccctttg |
234 |
Q |
| |
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||||||||||||||||| |
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| T |
36207978 |
gattggtatcccctttg |
36207962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 36202706 - 36202490
Alignment:
| Q |
18 |
caaacacagattggtattgcaataggtctcaattttgatgataagatcgatctatctgaaacatcttgttgcgtgtgttatggtaataacaaaagaatga |
117 |
Q |
| |
|
|||||||| |||||| ||||||| |||| ||||||||||||||||| |||||| ||||| |||| |||||| ||| ||| ||||||||||||||||| | |
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| T |
36202706 |
caaacacaaattggtgatgcaatatgtctgaattttgatgataagattgatctagctgaatcatcctgttgcatgtcttacggtaataacaaaagaataa |
36202607 |
T |
|
| Q |
118 |
caactgcagaaagagctcttcttctgtgcgctaagataaaggaactgcaaacagtactagttgtattgtgtgatcttcatggtagacttgatttaggtga |
217 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||| ||||||||| ||| |||||| |||||||||||||||||| |||| |
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| T |
36202606 |
gaactgcagaaagagctcttctactgtgtgctaagatgaaggagctgcaaacagtcctagttgtaatgtatgatctccatggtagacttgatttaagtga |
36202507 |
T |
|
| Q |
218 |
gattggtatcccctttg |
234 |
Q |
| |
|
|||||||| ||||||| |
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|
| T |
36202506 |
aattggtatgccctttg |
36202490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 35 - 234
Target Start/End: Complemental strand, 36199282 - 36199083
Alignment:
| Q |
35 |
tgcaataggtctcaattttgatgataagatcgatctatctgaaacatcttgttgcgtgtgttatggtaataacaaaagaatgacaactgcagaaagagct |
134 |
Q |
| |
|
|||||||||||| ||||||||||||| || ||| || ||||| | |||||||| |||||| || |||||| |||||| |||||||| ||||||||||| |
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|
| T |
36199282 |
tgcaataggtctgaattttgatgatacgacagatatagctgaatctacttgttgcatgtgttttgttaataataaaagattgacaactacagaaagagct |
36199183 |
T |
|
| Q |
135 |
cttcttctgtgcgctaagataaaggaactgcaaacagtactagttgtattgtgtgatcttcatggtagacttgatttaggtgagattggtatcccctttg |
234 |
Q |
| |
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||||||||||| |||||||| || || ||||||||||| ||||||||| ||| ||||||| ||||||||||||||||| || |||||||||||||||||| |
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| T |
36199182 |
cttcttctgtgtgctaagatgaaagagctgcaaacagtcctagttgtagtgtatgatctttatggtagacttgatttaagtaagattggtatcccctttg |
36199083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 36201321 - 36201105
Alignment:
| Q |
18 |
caaacacagattggtattgcaataggtctcaattttgatgataagatcgatctatctgaaacatcttgttgcgtgtgttatggtaataacaaaagaatga |
117 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |||||| || || | | || || |||||||| |||||| |||||||| |||||||||| |
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| T |
36201321 |
caaacacagattggtgatgcaataggtctcaattttaatgatatgacggaggcagcaaaatcaacttgttgcatgtgttttggtaatagtaaaagaatga |
36201222 |
T |
|
| Q |
118 |
caactgcagaaagagctcttcttctgtgcgctaagataaaggaactgcaaacagtactagttgtattgtgtgatcttcatggtagacttgatttaggtga |
217 |
Q |
| |
|
|||||||||| ||||||| |||| | || |||||||| ||||| ||||||||||| ||||||||| ||| |||||||||||||||| |||||||||| || |
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|
| T |
36201221 |
caactgcagatagagctcatcttatttgtgctaagatgaaggagctgcaaacagtcctagttgtactgtatgatcttcatggtagatttgatttagggga |
36201122 |
T |
|
| Q |
218 |
gattggtatcccctttg |
234 |
Q |
| |
|
||||||| ||||||||| |
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| T |
36201121 |
gattggtgtcccctttg |
36201105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 36213607 - 36213391
Alignment:
| Q |
18 |
caaacacagattggtattgcaataggtctcaattttgatgataagatcgatctatctgaaacatcttgttgcgtgtgttatggtaataacaaaagaatga |
117 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||| |||||||||| || || | ||| || |||||||| |||||| |||||||| |||| | ||| |
|
|
| T |
36213607 |
caaacacaaattggtgatgcaataggtctcaattttaatgataagatgaatgtagccgaatcaacttgttgcatgtgttttggtaatagtaaaacagtga |
36213508 |
T |
|
| Q |
118 |
caactgcagaaagagctcttcttctgtgcgctaagataaaggaactgcaaacagtactagttgtattgtgtgatcttcatggtagacttgatttaggtga |
217 |
Q |
| |
|
|||||||||||||||||| |||| | || |||||||| || || ||||||||||| || ||||| ||| |||||||||||| ||||| ||||||||||| |
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|
| T |
36213507 |
caactgcagaaagagctcatcttatttgtgctaagatgaaagagctgcaaacagtcctgattgtaatgtatgatcttcatgggagactcgatttaggtga |
36213408 |
T |
|
| Q |
218 |
gattggtatcccctttg |
234 |
Q |
| |
|
||||||| ||||||||| |
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|
| T |
36213407 |
gattggtgtcccctttg |
36213391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 49 - 230
Target Start/End: Complemental strand, 36197122 - 36196941
Alignment:
| Q |
49 |
attttgatgataagatcgatctatctgaaacatcttgttgcgtgtgttatggtaataacaaaagaatgacaactgcagaaagagctcttcttctgtgcgc |
148 |
Q |
| |
|
||||||||||||||| |||| | ||||| || |||||||| ||| || |||||||| ||||||||| |||||||||||||||||| |||| |||| || |
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|
| T |
36197122 |
attttgatgataagacggatccagctgaatcaacttgttgcatgttttttggtaatagaaaaagaatggcaactgcagaaagagctcatcttttgtgtgc |
36197023 |
T |
|
| Q |
149 |
taagataaaggaactgcaaacagtactagttgtattgtgtgatcttcatggtagacttgatttaggtgagattggtatcccc |
230 |
Q |
| |
|
|||||| || || ||||||||||| ||||||||| ||| |||||||| ||| ||||| |||||||||||||||||||||||| |
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|
| T |
36197022 |
taagatgaaagagctgcaaacagtcctagttgtactgtatgatcttcgtgggagactcgatttaggtgagattggtatcccc |
36196941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 36210265 - 36210049
Alignment:
| Q |
18 |
caaacacagattggtattgcaataggtctcaattttgatgataagatcgatctatctgaaacatcttgttgcgtgtgttatggtaataacaaaagaatga |
117 |
Q |
| |
|
|||||| | ||||| | ||||||||||||||||||| ||||||||| || || | | | || || ||||| | ||| |||||||| |||||||||| |
|
|
| T |
36210265 |
caaacagaaattggcaatgcaataggtctcaattttaatgataagacgtatgtagccgtatcaactggttgcacgcgttttggtaatagtaaaagaatga |
36210166 |
T |
|
| Q |
118 |
caactgcagaaagagctcttcttctgtgcgctaagataaaggaactgcaaacagtactagttgtattgtgtgatcttcatggtagacttgatttaggtga |
217 |
Q |
| |
|
|||||||||||||||| |||||| || |||||||| || || ||||||||||| || ||||| ||| ||||||||||||| |||| ||||||| || |
|
|
| T |
36210165 |
taactgcagaaagagctgatcttctttgtgctaagatgaaagagctgcaaacagtcctgattgtaatgtatgatcttcatggtcgactcaatttaggaga |
36210066 |
T |
|
| Q |
218 |
gattggtatcccctttg |
234 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
36210065 |
gattggtatcccctttg |
36210049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 108 - 234
Target Start/End: Complemental strand, 36188742 - 36188616
Alignment:
| Q |
108 |
aaaagaatgacaactgcagaaagagctcttcttctgtgcgctaagataaaggaactgcaaacagtactagttgtattgtgtgatcttcatggtagacttg |
207 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||| || |||||||| || || ||||||||||| || ||||| ||| ||||||||||||| |||| |
|
|
| T |
36188742 |
aaaagaatgataactgcagaaagagctgatcttctttgtgctaagatgaaagagctgcaaacagtcctgattgtaatgtatgatcttcatggtcgactca |
36188643 |
T |
|
| Q |
208 |
atttaggtgagattggtatcccctttg |
234 |
Q |
| |
|
||||||| ||||||||||||||||||| |
|
|
| T |
36188642 |
atttaggagagattggtatcccctttg |
36188616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 36183575 - 36183540
Alignment:
| Q |
20 |
aacacagattggtattgcaataggtctcaattttga |
55 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |
|
|
| T |
36183575 |
aacacaaattggtattgcaataggtctcaattttga |
36183540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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