View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9782_low_17 (Length: 240)
Name: NF9782_low_17
Description: NF9782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9782_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 43762694 - 43762917
Alignment:
| Q |
1 |
ttgccacctaacttcagagattgaaagttatttttgtaagacatgaaaatttgcagtaaactttacagagctactcttgtttagcatt-atcgtggactt |
99 |
Q |
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| T |
43762694 |
ttgccacctaacttcagagattgaaagttatttttgtaagacatgaaaatttgcagtaaactttacagagctactcttgtttagcatttatcatggactt |
43762793 |
T |
|
| Q |
100 |
tcaaagattaatatgtggatctggcaacagcaactcataagaattttgagaggcgtttttgaagaaccatgcttgtataggcatcccatttccttgtttc |
199 |
Q |
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| T |
43762794 |
tcaaagattaatatgtggatctggcaacagcaactcataagaattttgagaggcgtttttgaagaaccatgcttgtataggcatcccatttccttgtttc |
43762893 |
T |
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| Q |
200 |
ttcttatgcctggtatgtaggaat |
223 |
Q |
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|||||||||||||||||||||||| |
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| T |
43762894 |
ttcttatgcctggtatgtaggaat |
43762917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 43757065 - 43757105
Alignment:
| Q |
1 |
ttgccacctaacttcagagattgaaagttatttttgtaaga |
41 |
Q |
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|||||||| ||||||||||||||||||||||||||| |||| |
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| T |
43757065 |
ttgccaccaaacttcagagattgaaagttatttttggaaga |
43757105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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