View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9782_low_18 (Length: 239)
Name: NF9782_low_18
Description: NF9782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9782_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 1765539 - 1765300
Alignment:
| Q |
1 |
gctagagatcactggtgttgatgtagatgcctgcctcaaattaggagttcaaaaattcatagcaattatttgtgctatttccctcctctgcatgattaat |
100 |
Q |
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| T |
1765539 |
gctagagatcactggtgttgatgtagatgcctgcctcaaa--aggagttcaaaaattcatagcaattatttgtgctatttccctcctctgcatgattaat |
1765442 |
T |
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| Q |
101 |
tgcatagtgcacactttgtgttcttg------atttcttcttctttatggatcagcttgcgactttgtttattgcggtatacattaa------------a |
182 |
Q |
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| T |
1765441 |
tgcatagtgcacactttgtgttcttgattttgatttcttcttctttatggatcagcttgagactttgtttattgcggtatacattaaatcttttataata |
1765342 |
T |
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| Q |
183 |
tcttttatacatgaattacgtaggtcgataatagtgctttgt |
224 |
Q |
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| T |
1765341 |
tcttttatacatgaattacgtaggtcgataatagtgctttgt |
1765300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 1755924 - 1755989
Alignment:
| Q |
53 |
aaattcatagcaattatttgtgctatttccctcctctgcatgattaattgcatagtgcacactttg |
118 |
Q |
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| T |
1755924 |
aaatccatagcaattatttgtgttatttccctactttggatgattaattgcatagtgcacactttg |
1755989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 53 - 118
Target Start/End: Complemental strand, 1765825 - 1765760
Alignment:
| Q |
53 |
aaattcatagcaattatttgtgctatttccctcctctgcatgattaattgcatagtgcacactttg |
118 |
Q |
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| T |
1765825 |
aaatccatagcaattatttgtgttatttccctactttggatgattaattgcatagttcacactttg |
1765760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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