View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9782_low_19 (Length: 238)

Name: NF9782_low_19
Description: NF9782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9782_low_19
NF9782_low_19
[»] chr5 (6 HSPs)
chr5 (1-238)||(9894731-9894968)
chr5 (91-176)||(9870111-9870196)
chr5 (165-238)||(12531580-12531654)
chr5 (147-238)||(12546947-12547039)
chr5 (161-238)||(12538686-12538764)
chr5 (165-194)||(12537076-12537105)
[»] chr4 (1 HSPs)
chr4 (171-238)||(24860634-24860702)
[»] chr7 (3 HSPs)
chr7 (169-238)||(3929931-3930001)
chr7 (169-238)||(3928579-3928649)
chr7 (160-214)||(21320196-21320250)
[»] chr2 (1 HSPs)
chr2 (166-238)||(13576436-13576509)
[»] chr8 (2 HSPs)
chr8 (170-238)||(38807084-38807153)
chr8 (170-238)||(43479645-43479714)


Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 9894968 - 9894731
Alignment:
Q  1 aacttttaataaataatcataccaaatcaaagctatgcataatgataaaacaaagaaaattgaaaatcatagcactgttacaagataataacaagctaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  9894968 aacttttaataaataatcataccaaatcaaagctatgcataatgataaaactatgaaaattgaaaatcatagcactgttacaagataataacaagctaac 9894869  T
Q  101 catttaaacagaataaaaaacacataaatcagaaaccctaaaccctaacttggaacatcttaatcaaatctaagccctctcgcctctgattctgcgagca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9894868 catttaaacagaataaaaaacacataaatcagaaaccctaaaccctaacttgaaacatcttaatcaaatctaagccctctcgcctctgattctgcgagca 9894769  T
Q  201 agttcaatatccttgccataatagtaactctcttagca 238  Q
    |||||||||||||||||||||||||||||| |||||||    
T  9894768 agttcaatatccttgccataatagtaactcacttagca 9894731  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 91 - 176
Target Start/End: Complemental strand, 9870196 - 9870111
Alignment:
Q  91 acaagctaaccatttaaacagaataaaaaacacata--aatcagaaaccctaaaccctaacttggaacatcttaatcaaatctaagcc 176  Q
    ||||| ||||||| ||||||||||||||||||||||  ||||||||||||  ||||||||||||||||||||||||||||| ||||||    
T  9870196 acaagttaaccatctaaacagaataaaaaacacatataaatcagaaaccc--aaccctaacttggaacatcttaatcaaatataagcc 9870111  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 165 - 238
Target Start/End: Complemental strand, 12531654 - 12531580
Alignment:
Q  165 caaatctaagccctctcgcctctgattctgcgagcaagttcaatatcctt-gccataatagtaactctcttagca 238  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||| | ||| |||||||| |||||||||    
T  12531654 caaatctaagccctctcgcctctgattctgcgagcgagttgaatatccttaggcatgatagtaaccctcttagca 12531580  T

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Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 147 - 238
Target Start/End: Original strand, 12546947 - 12547039
Alignment:
Q  147 aacttggaacatcttaatcaaatctaagccctctcgcctctgattctgcgagcaagttcaatatcctt-gccataatagtaactctcttagca 238  Q
    |||||||| |||  ||| ||||||||||| ||||||||||| |||||||||||||||| ||||||||| | ||| |||||||| |||||||||    
T  12546947 aacttggatcatgataaccaaatctaagctctctcgcctctaattctgcgagcaagttgaatatccttaggcatgatagtaaccctcttagca 12547039  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 238
Target Start/End: Complemental strand, 12538764 - 12538686
Alignment:
Q  161 taatcaaatctaagccctctcgcctctgattctgcgagcaagttcaatatcctt-gccataatagtaactctcttagca 238  Q
    ||||||||||||||| |||| |||||||||| ||||||  |||| |||| | || | ||| ||||||||||||||||||    
T  12538764 taatcaaatctaagcactcttgcctctgattatgcgagtgagttgaatacctttaggcatgatagtaactctcttagca 12538686  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 194
Target Start/End: Complemental strand, 12537105 - 12537076
Alignment:
Q  165 caaatctaagccctctcgcctctgattctg 194  Q
    ||||||||||||||||||||||||||||||    
T  12537105 caaatctaagccctctcgcctctgattctg 12537076  T

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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 171 - 238
Target Start/End: Complemental strand, 24860702 - 24860634
Alignment:
Q  171 taagccctctcgcctctgattctgcgagcaagttcaatatcctt-gccataatagtaactctcttagca 238  Q
    ||||||||||||||||||||||||||||| |||| ||||||||| | |||||| |||||||||||||||    
T  24860702 taagccctctcgcctctgattctgcgagcgagttgaatatccttgggcataatggtaactctcttagca 24860634  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 238
Target Start/End: Original strand, 3929931 - 3930001
Alignment:
Q  169 tctaagccctctcgcctctgattctgcgagcaagttcaatatcctt-gccataatagtaactctcttagca 238  Q
    |||||||||| |||||||||||||| |  ||||||| ||||||||| | ||||||||||||||||||||||    
T  3929931 tctaagccctttcgcctctgattcttcttgcaagttgaatatccttcggcataatagtaactctcttagca 3930001  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 238
Target Start/End: Original strand, 3928579 - 3928649
Alignment:
Q  169 tctaagccctctcgcctctgattctgcgagcaagttcaatatcctt-gccataatagtaactctcttagca 238  Q
    ||||||| |||||||  ||||||||||  ||||||| ||||||||| | || |||||||||||||||||||    
T  3928579 tctaagctctctcgcacctgattctgcatgcaagtttaatatccttaggcacaatagtaactctcttagca 3928649  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 21320250 - 21320196
Alignment:
Q  160 ttaatcaaatctaagccctctcgcctctgattctgcgagcaagttcaatatcctt 214  Q
    |||||| ||| ||||||||||| ||||||||| ||| |||||||| |||||||||    
T  21320250 ttaatcgaatttaagccctctcacctctgattatgcaagcaagttgaatatcctt 21320196  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 13576509 - 13576436
Alignment:
Q  166 aaatctaagccctctcgcctctgattctgcgagcaagttcaatatcctt-gccataatagtaactctcttagca 238  Q
    ||||||||||||| |||||||||||||| |  ||||||| ||||||||| | |||||||||||| |||||||||    
T  13576509 aaatctaagccctttcgcctctgattcttctcgcaagttgaatatccttaggcataatagtaaccctcttagca 13576436  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 238
Target Start/End: Complemental strand, 38807153 - 38807084
Alignment:
Q  170 ctaagccctctcgcctctgattctgcgagcaagttcaatatcctt-gccataatagtaactctcttagca 238  Q
    |||||||||||||||||||||||| |  ||||||| ||| ||||| | ||| ||||||||||||||||||    
T  38807153 ctaagccctctcgcctctgattcttcttgcaagttgaatgtccttaggcatgatagtaactctcttagca 38807084  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 43479645 - 43479714
Alignment:
Q  170 ctaagccctctcgcctctgattctgcgagcaagttcaatatcctt-gccataatagtaactctcttagca 238  Q
    |||||||||||||||||| ||||| |  ||||||| ||||||||| | |||||| ||||| |||||||||    
T  43479645 ctaagccctctcgcctctaattcttcttgcaagttgaatatccttaggcataattgtaaccctcttagca 43479714  T

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