View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9782_low_2 (Length: 455)
Name: NF9782_low_2
Description: NF9782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9782_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Complemental strand, 37834252 - 37833814
Alignment:
| Q |
1 |
tcctatatcctatgatctcatgtagtgcaatgcaaaagtatgcccaactacctcttatatatttgtcatattttattcaccaatgagagacaaaagggag |
100 |
Q |
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| T |
37834252 |
tcctatatcctatgatctcatgtagtgcaatgcaaaagtatgcccaactacctcttatatatttgtcatattttattcaccaatgagagacaaaaggaag |
37834153 |
T |
|
| Q |
101 |
gaaagagagatattgtgtttcgtgcaaaaacactacttatgagtagctagcaactagtatagtagcaaagctaaaacaactcaaccccctacgtagcttt |
200 |
Q |
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| T |
37834152 |
gaaagagagatattgtgtttcgtgcaaaaacactacttatgagtagctagcaactagtgtagtagcaaagctaaaacaactcaaccccctacgtagcttt |
37834053 |
T |
|
| Q |
201 |
catctgattctcatgaaaggctgagaactctctcattgccttttctttatcacttctcttttctctccctataacaatgcttatcatcttccttacttct |
300 |
Q |
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|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37834052 |
catctgattctcatgaaaagctgaaaactctctcattgccttttctttatcacttctcttttctctccctataacaatgcttatcatcttccttacttct |
37833953 |
T |
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| Q |
301 |
caacttcactaacatcttcttctccacacatccatggagtttgaccttgaaaaccctcttgaatatttccatgaccttcctaattctcaagatgtttctt |
400 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37833952 |
caacatcactaacatc---ttctccacacatccatggagtttgaccttgaaaaccctcttgaatatttccatgaccttcctaattctcaagatgtttctt |
37833856 |
T |
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| Q |
401 |
cacttttcctcattgaatctgaccacatccctccactaaatt |
442 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
37833855 |
cacttttcctcattgaatctgaccacatccctccactaaatt |
37833814 |
T |
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