View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9782_low_21 (Length: 233)
Name: NF9782_low_21
Description: NF9782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9782_low_21 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 43762475 - 43762707
Alignment:
| Q |
1 |
cttatatcactccaatcttatttttctcccccaaaccaactcattcaccttataactcctgtttgggcataagattgttgactcacattttgaagtgaaa |
100 |
Q |
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| T |
43762475 |
cttatatcactccaatcttatttttctcccccaaaccaactcattcaccttataactcctgtttgggcataagattgttgactcacattttgaagtgaaa |
43762574 |
T |
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| Q |
101 |
caaaatcaaaagatcattttcagcactgtgtgacatggctgctccattttcattttcttttacaggtaagattctgctctgcagagactgtgaggaagga |
200 |
Q |
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| T |
43762575 |
caaaatcaaaagatcattttcagcactgtttgacatggctgctccattttcattttcttttacaggtaagattctgctctgcagagactgtgaggaagga |
43762674 |
T |
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| Q |
201 |
atattttacaagtgaaactttgccacctaactt |
233 |
Q |
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| T |
43762675 |
atattttacaagtgaaactttgccacctaactt |
43762707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 233
Target Start/End: Original strand, 43756961 - 43757078
Alignment:
| Q |
116 |
attttcagcactgtgtgacatggctgctccattttcattttcttttacaggtaagattctgctctgcagagactgtgaggaaggaatattttacaagtga |
215 |
Q |
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| T |
43756961 |
atttttagcattgtttgacatgattggtctatttttattttcctttacaggttaaattttgctctgcagaaactctgaagaaagaatattttacagatga |
43757060 |
T |
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| Q |
216 |
aactttgccacctaactt |
233 |
Q |
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| T |
43757061 |
gactttgccaccaaactt |
43757078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 225
Target Start/End: Complemental strand, 13334257 - 13334178
Alignment:
| Q |
146 |
attttcattttcttttacaggtaagattctgctctgcagagactgtgaggaaggaatattttacaagtgaaactttgcca |
225 |
Q |
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| T |
13334257 |
attttcattttcctttacaggttaaatttttctctgcagaaactctcaagaaggaatattttacagatgaaactttgcca |
13334178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 233
Target Start/End: Original strand, 13334066 - 13334156
Alignment:
| Q |
143 |
tccattttcattttcttttacaggtaagattctgctctgcagagactgtgaggaaggaatattttacaagtgaaactttgccacctaactt |
233 |
Q |
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| T |
13334066 |
tccattttctttttcctttacaggttaaattttgctctgcagaaactctcaaaaaggaatattttacagatgaaactttggcaccaaactt |
13334156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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