View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9782_low_6 (Length: 345)
Name: NF9782_low_6
Description: NF9782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9782_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 340
Target Start/End: Original strand, 8957746 - 8958068
Alignment:
| Q |
18 |
aagacaaggacggagctagccttttttatcaagtcgataatttggatgaagcaaaagttcttggggctgtttttattacaaatgttacaaacatatactt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8957746 |
aagacaaggacggagctagccttttttatcaagtcgataatttggatgaagcaaaagttcttggggctgtttttattacaaatgttacaaacatatactt |
8957845 |
T |
|
| Q |
118 |
ttcagaaaatagttttgcatccatcattgttgatccaatcaatggagaagtagtcaaagcttacatcaagagttataactctaaaaactctacttcaaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8957846 |
ttcagaaaatagttttgcatccatcattgttgatccaatcaatggagaagtagtcaaagcttacatcaagagttataactctaaaaactctacttcaaaa |
8957945 |
T |
|
| Q |
218 |
gcaagcatgtctttcaagaaaacagtttttggaattaaaccagcacctagtgtttcttcttatagttcaagagggccttcaaatagttgtccatatattt |
317 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8957946 |
gcaagcatgtctttcatgaaaacagtttttggaattaaaccagcacctagtgtttcttcttatagttcaagagggccttcaaatagttgtccatatattt |
8958045 |
T |
|
| Q |
318 |
tgaaacctgacatctctgctcct |
340 |
Q |
| |
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|||||||||||||| |||||||| |
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| T |
8958046 |
tgaaacctgacatcactgctcct |
8958068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 210 - 330
Target Start/End: Complemental strand, 8946129 - 8946009
Alignment:
| Q |
210 |
cttcaaaagcaagcatgtctttcaagaaaacagtttttggaattaaaccagcacctagtgtttcttcttatagttcaagagggccttcaaatagttgtcc |
309 |
Q |
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| T |
8946129 |
cttcaatagcaaatatgtctttcaagttatcaatttttggaactaaaccagcacctggtgtttactcttctagttcgagaggaccatcaaatagttgtcc |
8946030 |
T |
|
| Q |
310 |
atatattttgaaacctgacat |
330 |
Q |
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|||| | |||||||||||||| |
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| T |
8946029 |
atatgtcttgaaacctgacat |
8946009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 330
Target Start/End: Original strand, 8962945 - 8963072
Alignment:
| Q |
203 |
aactctacttcaaaagcaagcatgtctttcaagaaaacagtttttggaattaaaccagcacctagtgtttcttcttatagttcaagagggccttcaaata |
302 |
Q |
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||||||| ||||| || || ||||||||||||| ||| |||||| |||||||| |||||| || || ||||||||| |||||||| ||||| | |
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| T |
8962945 |
aactctagttcaatagaaaaaatgtctttcaagattacatcttttggtgctaaaccagtacctagggtggatttttatagttctagagggccatcaaaga |
8963044 |
T |
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| Q |
303 |
gttgtccatatattttgaaacctgacat |
330 |
Q |
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| T |
8963045 |
gttgtccatatgtgttgaaacctgacat |
8963072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 47 - 330
Target Start/End: Complemental strand, 34963066 - 34962792
Alignment:
| Q |
47 |
caagtcgataatttggatgaagcaaaagttcttggggctgtttttattacaaatgttacaaacatatacttttcagaaaatagttttgcatccatcattg |
146 |
Q |
| |
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|||||| |||||||| ||| |||||||||| |||| |||||||| ||| ||||||| || |||||| || |||| |||||||||||||| ||||| ||| |
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| T |
34963066 |
caagtcaataatttgaatgcagcaaaagtttttggagctgttttgatttcaaatgtctcagacatattctattcacaaaatagttttgcaaccatccttg |
34962967 |
T |
|
| Q |
147 |
ttgatccaatcaatggagaagtagtcaaagcttacatcaagagttataactctaaaaactctacttcaaaagcaagcatgtctttcaagaaaacagtttt |
246 |
Q |
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|| ||||||| ||||| ||| | ||||||||||||||||||||| |||||||| |||||| |||||||||||||||| |||||||||||| |
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| T |
34962966 |
ttaatccaataaatggtgaaattgtcaaagcttacatcaagagtagtaactcta---------cttcaattgcaagcatgtctttcatgaaaacagtttt |
34962876 |
T |
|
| Q |
247 |
tggaattaaaccagcacctagtgtttcttcttatagttcaagagggccttcaaatagttgtccatatattttgaaacctgacat |
330 |
Q |
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||||| ||||||||||||||||||| ||| ||||||||||||||||| ||| |||||||||||| | | |||||||||||||| |
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| T |
34962875 |
tggaactaaaccagcacctagtgttgattcatatagttcaagagggccatcatatagttgtccatttgtgttgaaacctgacat |
34962792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 125 - 340
Target Start/End: Complemental strand, 21687374 - 21687162
Alignment:
| Q |
125 |
aatagttttgcatccatcattgttgatccaatcaatggagaagtagtcaaagcttacatcaagagttataactctaaaaactctacttcaaaagcaagca |
224 |
Q |
| |
|
|||||||| ||||||||||| || ||||| | ||||||||| | || |||||||||||||||||| |||||||||| | ||| ||||| ||||| || |
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| T |
21687374 |
aatagtttcccatccatcattattaatccagtaaatggagaaattgtgaaagcttacatcaagagtcataactctaa---cgctagttcaatagcaaaca |
21687278 |
T |
|
| Q |
225 |
tgtctttcaagaaaacagtttttggaattaaaccagcacctagtgtttcttcttatagttcaagagggccttcaaatagttgtccatatattttgaaacc |
324 |
Q |
| |
|
|||||||||||||||||| ||| || ||||| || |||||||||| || |||||| ||||| || || |||||||||||||||||| | |||||||| |
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| T |
21687277 |
tgtctttcaagaaaacagctttcggtgttaaatcaacacctagtgtggatttttatagctcaaggggaccatcaaatagttgtccatatgtgttgaaacc |
21687178 |
T |
|
| Q |
325 |
tgacatctctgctcct |
340 |
Q |
| |
|
||||||| |||||||| |
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| T |
21687177 |
tgacatcactgctcct |
21687162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 218 - 338
Target Start/End: Complemental strand, 19375998 - 19375878
Alignment:
| Q |
218 |
gcaagcatgtctttcaagaaaacagtttttggaattaaaccagcacctagtgtttcttcttatagttcaagagggccttcaaatagttgtccatatattt |
317 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||| ||||||||||| | |||||||||||||||||||||||||| |||||||| | | | |
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| T |
19375998 |
gcaagcatgtctttcaagaaaacaatttttggtgttaaaccaacacctagtgttgatctttatagttcaagagggccttcaaataattgtccatttgtgt |
19375899 |
T |
|
| Q |
318 |
tgaaacctgacatctctgctc |
338 |
Q |
| |
|
||||||| |||||| |||||| |
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|
| T |
19375898 |
tgaaacccgacatcactgctc |
19375878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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