View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9782_low_9 (Length: 316)

Name: NF9782_low_9
Description: NF9782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9782_low_9
NF9782_low_9
[»] chr1 (4 HSPs)
chr1 (1-301)||(29857478-29857778)
chr1 (95-139)||(17407974-17408018)
chr1 (234-301)||(888414-888481)
chr1 (199-301)||(17408075-17408177)
[»] chr7 (2 HSPs)
chr7 (1-299)||(39733423-39733706)
chr7 (1-299)||(39839252-39839535)
[»] chr3 (1 HSPs)
chr3 (234-301)||(50667841-50667908)


Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 29857778 - 29857478
Alignment:
Q  1 ttgaaatcaacccgcgattcaacgagtgtgttcaatctgctaaatatgatgagactaatgggttgtggagagttgagactgtttccaatggaaatgaagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29857778 ttgaaatcaacccgcgattcaacgagtgtgttcaatctgctaaatatgatgagactaatgggttgtggagagttgagactgtttccaatggaaatgaagt 29857679  T
Q  101 tgagtatatttgtaggtcgcttgtggttgctactggtgagaatgcagagtgtgttgtgccttatattgaagggttaggtggtgaattcaagggtgaaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29857678 tgagtatatttgtaggtcgcttgtggttgctactggtgagaatgcagagtgtgttgtgccttatattgaagggttaggtggtgaattcaagggtgaaatt 29857579  T
Q  201 attcatgcttgtgattataaatcaggtgaaagttttagagggaagaaagttttggttgttggttgtggtaattctggaatggaactttctcttgatcttt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29857578 attcatgcttgtgattataaatcaggtgaaagttttagagggaagaaagttttggttgttggttgtggtaattctggaatggaactttctcttgatcttt 29857479  T
Q  301 g 301  Q
    |    
T  29857478 g 29857478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 95 - 139
Target Start/End: Original strand, 17407974 - 17408018
Alignment:
Q  95 tgaagttgagtatatttgtaggtcgcttgtggttgctactggtga 139  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||    
T  17407974 tgaagttgagtatatttgtaggtggcttgtggttgctaccggtga 17408018  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 301
Target Start/End: Complemental strand, 888481 - 888414
Alignment:
Q  234 tttagagggaagaaagttttggttgttggttgtggtaattctggaatggaactttctcttgatctttg 301  Q
    ||||||||||||||||||||||||||||| ||||| ||||| || |||||| ||| | | ||||||||    
T  888481 tttagagggaagaaagttttggttgttggatgtggaaattcaggtatggaagtttgtttggatctttg 888414  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 301
Target Start/End: Original strand, 17408075 - 17408177
Alignment:
Q  199 ttattcatgcttgtgattataaatcaggtgaaagttttagagggaagaaagttttggttgttggttgtggtaattctggaatggaactttctcttgatct 298  Q
    |||| ||||||||||| |||||||| ||||  | || ||| || || || ||| | |||||||| ||||| |||||||| |||||| |||||||||||||    
T  17408075 ttatgcatgcttgtgactataaatctggtgtgaattatagtggaaaaaatgttcttgttgttggatgtggaaattctggcatggaagtttctcttgatct 17408174  T
Q  299 ttg 301  Q
    |||    
T  17408175 ttg 17408177  T

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Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 39733706 - 39733423
Alignment:
Q  1 ttgaaatcaacccgcgattcaacgagtgtgttcaatctgctaaatatgatgagactaatgggttgtggagagttgagactgtttccaatggaaatgaagt 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||||||| || | ||| |||||||| ||  ||||            |||||||||    
T  39733706 ttgaaatcaacccgcaattcaacgagtgtgttcaatctgctaagtatgatgaaaccagtggattgtggagggtcaagac------------aaatgaagt 39733619  T
Q  101 tgagtatatttgtaggtcgcttgtggttgctactggtgagaatgcagagtgtgttgtgccttatattgaagggttaggtggtgaattcaagggtgaaatt 200  Q
    ||||||||||||||||| |||||| |||||||| || || ||||| |||||||||   ||| | ||||||||  |   |  ||||||||| |||||| ||    
T  39733618 tgagtatatttgtaggtggcttgttgttgctaccggcgaaaatgctgagtgtgttactcctgaaattgaaggact---ttctgaattcaaaggtgaagtt 39733522  T
Q  201 attcatgcttgtgattataaatcaggtgaaagttttagagggaagaaagttttggttgttggttgtggtaattctggaatggaactttctcttgatctt 299  Q
     || ||||||||||||| || |||||  ||| ||||  ||| ||||||||| | |||||||| ||||| ||||||||||||||||| || |||||||||    
T  39733521 gtttatgcttgtgattacaagtcagggaaaaattttgaaggaaagaaagttcttgttgttggatgtggaaattctggaatggaactctcacttgatctt 39733423  T

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Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 39839252 - 39839535
Alignment:
Q  1 ttgaaatcaacccgcgattcaacgagtgtgttcaatctgctaaatatgatgagactaatgggttgtggagagttgagactgtttccaatggaaatgaagt 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||||||| || | ||| |||||||| ||  ||||            |||||||||    
T  39839252 ttgaaatcaacccgcaattcaacgagtgtgttcaatctgctaagtatgatgaaaccagtggattgtggagggtcaagac------------aaatgaagt 39839339  T
Q  101 tgagtatatttgtaggtcgcttgtggttgctactggtgagaatgcagagtgtgttgtgccttatattgaagggttaggtggtgaattcaagggtgaaatt 200  Q
    ||||||||||||||||| |||||| |||||||| || || ||||| |||||||||   ||| | ||||||||   |  |  ||||||||| |||||| ||    
T  39839340 tgagtatatttgtaggtggcttgttgttgctaccggcgaaaatgctgagtgtgttactcctgaaattgaagg---actttctgaattcaaaggtgaagtt 39839436  T
Q  201 attcatgcttgtgattataaatcaggtgaaagttttagagggaagaaagttttggttgttggttgtggtaattctggaatggaactttctcttgatctt 299  Q
     || ||||||||||||| || |||||  ||| ||||  ||| ||||||||| | |||||||| ||||| ||||||||||||||||| || |||||||||    
T  39839437 gtttatgcttgtgattacaagtcagggaaaaattttgaaggaaagaaagttcttgttgttggatgtggaaattctggaatggaactctcacttgatctt 39839535  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 234 - 301
Target Start/End: Original strand, 50667841 - 50667908
Alignment:
Q  234 tttagagggaagaaagttttggttgttggttgtggtaattctggaatggaactttctcttgatctttg 301  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| ||| | | ||||||||    
T  50667841 tttagagggaagaaagttttggttgttggttgtggtaattctggtatggaagtttgtttagatctttg 50667908  T

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