View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9783_high_17 (Length: 305)
Name: NF9783_high_17
Description: NF9783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9783_high_17 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0064 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 194 - 303
Target Start/End: Complemental strand, 3623596 - 3623487
Alignment:
| Q |
194 |
aaggaaaatactttatttgacgacagaaaccatgcacgagaagcccacgaagctattaccacccttggatatttttatttccattaactaattatattct |
293 |
Q |
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| T |
3623596 |
aaggaaaatgctttatttgacgatagaaaccatgcacgagaagcccacaaagctattaccacccttggatgtttttatttccattaactaattatattct |
3623497 |
T |
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| Q |
294 |
ctcaccccat |
303 |
Q |
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|||||||||| |
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| T |
3623496 |
ctcaccccat |
3623487 |
T |
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Target: chr3 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 194 - 305
Target Start/End: Complemental strand, 45395562 - 45395451
Alignment:
| Q |
194 |
aaggaaaatactttatttgacgacagaaaccatgcacgagaagcccacgaagctattaccacccttggatatttttatttccattaactaattatattct |
293 |
Q |
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||||||||| ||||||| |||||| |||||||||||||||| ||||||| | |||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
45395562 |
aaggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgttattaccatccttggatatttttctttccattaactaattatattct |
45395463 |
T |
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| Q |
294 |
ctcaccccatgt |
305 |
Q |
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|||| ||||||| |
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| T |
45395462 |
ctcatcccatgt |
45395451 |
T |
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Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 194 - 300
Target Start/End: Complemental strand, 17922993 - 17922887
Alignment:
| Q |
194 |
aaggaaaatactttatttgacgacagaaaccatgcacgagaagcccacgaagctattaccacccttggatatttttatttccattaactaattatattct |
293 |
Q |
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| T |
17922993 |
aaggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgctattaccacccttggatgtttttctttccattagctaattatattct |
17922894 |
T |
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| Q |
294 |
ctcaccc |
300 |
Q |
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| T |
17922893 |
ctcaccc |
17922887 |
T |
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Target: scaffold0064 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 196 - 305
Target Start/End: Complemental strand, 20051 - 19942
Alignment:
| Q |
196 |
ggaaaatactttatttgacgacagaaaccatgcacgagaagcccacgaagctattaccacccttggatatttttatttccattaactaattatattctct |
295 |
Q |
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||||||| ||||||| |||||| |||||||||||||||| |||||| | ||||| || |||||||| ||||| |||||||||| | |||||||||||| |
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| T |
20051 |
ggaaaatgctttattacacgacataaaccatgcacgagaaagccacgatgttattatcatccttggatgtttttctttccattaattgattatattctct |
19952 |
T |
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| Q |
296 |
caccccatgt |
305 |
Q |
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| T |
19951 |
catcccatgt |
19942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 37786972 - 37787027
Alignment:
| Q |
133 |
ttaatattattttcatcactttcaaattaatatcttcaattttgcatttattgtaa |
188 |
Q |
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| T |
37786972 |
ttaatattattttcaccactttcaatttaatatattctattttacatttatggtaa |
37787027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 3384546 - 3384595
Alignment:
| Q |
134 |
taatattattttcatcactttcaaattaatatcttcaattttgcatttat |
183 |
Q |
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| T |
3384546 |
taatattactttcatcactttcaattcaatatattcaactttgcatttat |
3384595 |
T |
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