View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9783_high_20 (Length: 283)
Name: NF9783_high_20
Description: NF9783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9783_high_20 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 1023713 - 1023995
Alignment:
| Q |
1 |
gacgaaacaaagatagacaaaaccaaggctaccataacaaggttacagtcactaattattgtaacatctcaggctgtgtctactacctcagctgccatca |
100 |
Q |
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| T |
1023713 |
gacgaaacaaagatagacaaaaccaaggctaccataacaaggttacagtcactaattattgtaacatctcaggctgtgtctactacctcagctgccatca |
1023812 |
T |
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| Q |
101 |
atggtctaagagactctgatcttgttcctcagcttgttgagctttgtcatgggtatgtctctctattctactattggtccctctctgaatttaaatataa |
200 |
Q |
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| T |
1023813 |
atggtctaagagactctgatcttgttcctcagcttgttgagctttgtcatgggtatgtctctctattctactattggtccctctctgaatttaaatataa |
1023912 |
T |
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| Q |
201 |
gtaataaacaagtacatttatcttattcacatttgagctttgtcatcatggatacgtgcacttttttagtcatatatttatat |
283 |
Q |
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| T |
1023913 |
gtaataaacaagtacatttatcttattcacatttgagctttgtcatcatggatacgtgtacttttttagtcatatatttatat |
1023995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 31341513 - 31341376
Alignment:
| Q |
18 |
caaaaccaaggctaccataacaaggttacagtcactaattattgtaacatctcaggctgtgtctactacctcagctgccatcaatggtctaagagactct |
117 |
Q |
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|||||||||| || |||||| ||||| ||||| |||||| |||| ||||| || ||||||||||| ||||| |||| || | |||||| ||||||||| |
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| T |
31341513 |
caaaaccaagtctgccataaataggttgcagtcgctaattgttgttacatcgcaagctgtgtctaccacctcgactgctattattggtcttagagactct |
31341414 |
T |
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| Q |
118 |
gatcttgttcctcagcttgttgagctttgtcatgggta |
155 |
Q |
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| T |
31341413 |
gatcttgttcctcagcttgttgagctctgtcatgggta |
31341376 |
T |
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