View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9783_high_24 (Length: 256)
Name: NF9783_high_24
Description: NF9783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9783_high_24 |
 | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 11 - 240
Target Start/End: Complemental strand, 12844505 - 12844276
Alignment:
| Q |
11 |
gtgcgcacgttggacttcattttcttcagtttgtttggattggacttcatcttcttcagcatgtaccatagcagcaacttgttggactacctctgatgca |
110 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12844505 |
gtgcacaccttggacttcattttcttcagtttgtttggattggacttcatcttcttcagcatgtaccatagcagcaacttgttggactacctctgatgca |
12844406 |
T |
|
| Q |
111 |
acactatcataggaatcttccactacctccattgtaatgtcaaaatcgtatgaatcttggactacctccatttgtgccgtagtactaatatggttctgat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12844405 |
acactatcataggaatcttccactacctccattgtaatgtcaaaatcgtatgaatcttggactacctccatttgtgccgtagtactaatatggttctgat |
12844306 |
T |
|
| Q |
211 |
aataacaatggcttctcattttatactact |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
12844305 |
aataacaatggcttctcattttatactact |
12844276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 25098740 - 25098520
Alignment:
| Q |
20 |
ttggacttcattttcttcagtttgtttggattggacttcatcttcttcagcatgtaccatagcagcaacttgttggactacctctgatgcaacactatca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25098740 |
ttggacttcattttcttcagtttgtttggattggacttcatcttcttcagcatgtaccatagcagcaacttgttggactacctctgatgcaacactatca |
25098641 |
T |
|
| Q |
120 |
taggaatcttccactacctccattgtaatgtcaaaatcgtatgaatcttggactacctccatttgtgccgtagtactaatatggttctgataataacaat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
25098640 |
taggaatcttccactacctccattgtaatgtcaaaatcgtatgaatattggactacctccatttgtgccgtagtactaatatggttcggataataacaat |
25098541 |
T |
|
| Q |
220 |
ggcttctcattttatactact |
240 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
25098540 |
ggcttctcattttatactact |
25098520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 240
Target Start/End: Complemental strand, 50438678 - 50438449
Alignment:
| Q |
11 |
gtgcgcacgttggacttcattttcttcagtttgtttggattggacttcatcttcttcagcatgtaccatagcagcaacttgttggactacctctgatgca |
110 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
50438678 |
gtgcacaccttggacttcattttcttcagtttgtttggattggacttcatcttcttcagcatgtaccatagcagcaacttgttggactacctctgatgaa |
50438579 |
T |
|
| Q |
111 |
acactatcataggaatcttccactacctccattgtaatgtcaaaatcgtatgaatcttggactacctccatttgtgccgtagtactaatatggttctgat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50438578 |
acactatcataggaatcttccactacctccattgtaatgtcaaaatcgtatgaatcttggactacctccatttgtgccgtagtactaatatggttctgat |
50438479 |
T |
|
| Q |
211 |
aataacaatggcttctcattttatactact |
240 |
Q |
| |
|
|||||||||| ||| ||||||||||||||| |
|
|
| T |
50438478 |
aataacaatgacttttcattttatactact |
50438449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 11 - 240
Target Start/End: Original strand, 27442132 - 27442361
Alignment:
| Q |
11 |
gtgcgcacgttggacttcattttcttcagtttgtttggattggacttcatcttcttcagcatgtaccatagcagcaacttgttggactacctctgatgca |
110 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27442132 |
gtgcacaccttggacttcattttcttcagtttgtttggattggacttcatcttcttcagcatgtaccatagcagcaacttgttggactacctctgatgca |
27442231 |
T |
|
| Q |
111 |
acactatcataggaatcttccactacctccattgtaatgtcaaaatcgtatgaatcttggactacctccatttgtgccgtagtactaatatggttctgat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27442232 |
acactatcataggaatcttccactacctccattgtaatgtcaaaatcgtatgaatcttgggctacctccatttgtgccgtagtactaatatggttctgat |
27442331 |
T |
|
| Q |
211 |
aataacaatggcttctcattttatactact |
240 |
Q |
| |
|
| || |||| ||||||||||||||||||| |
|
|
| T |
27442332 |
agtatcaataacttctcattttatactact |
27442361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 177
Target Start/End: Complemental strand, 29956787 - 29956732
Alignment:
| Q |
127 |
cttccactacctccattgta-----atgtcaaaatcgtatgaatcttggactacct |
177 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
29956787 |
cttccactacctccattgtatagtaatgtcaaaatcgtaagaatcttggactacct |
29956732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 11 - 240
Target Start/End: Complemental strand, 45229 - 45000
Alignment:
| Q |
11 |
gtgcgcacgttggacttcattttcttcagtttgtttggattggacttcatcttcttcagcatgtaccatagcagcaacttgttggactacctctgatgca |
110 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
45229 |
gtgcacaccttggacttcattttcttcagtttgtttggattggacttcatcttcttcagcatgtaccatagcagcaacttgttggactacctctgatgta |
45130 |
T |
|
| Q |
111 |
acactatcataggaatcttccactacctccattgtaatgtcaaaatcgtatgaatcttggactacctccatttgtgccgtagtactaatatggttctgat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45129 |
acactatcataggaatcttccactacctccattgtaatgtcaaaatcgtatgaatcttggtctacctccatttgtgccgtagtactaatatggttctgat |
45030 |
T |
|
| Q |
211 |
aataacaatggcttctcattttatactact |
240 |
Q |
| |
|
| || |||| ||||||||||||||||||| |
|
|
| T |
45029 |
agtatcaataacttctcattttatactact |
45000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 136 - 240
Target Start/End: Original strand, 16356852 - 16356956
Alignment:
| Q |
136 |
cctccattgtaatgtcaaaatcgtatgaatcttggactacctccatttgtgccgtagtactaatatggttctgataataacaatggcttctcattttata |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
16356852 |
cctccattgtaatgtcaaaatcgtatgaatcttggactacctccatttgtgtcgtagtactaatatggttctgataataacaatgacttctcattttata |
16356951 |
T |
|
| Q |
236 |
ctact |
240 |
Q |
| |
|
|||| |
|
|
| T |
16356952 |
gtact |
16356956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University