View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9783_high_27 (Length: 250)
Name: NF9783_high_27
Description: NF9783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9783_high_27 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 27959954 - 27959898
Alignment:
| Q |
1 |
cacaattatgcaggctagcatatatcacatgggtctggtttagtgtttcatgaagat |
57 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27959954 |
cacaattatgcaggcatgcatatatcatatgggtctggtttagtgtttcatgaagat |
27959898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 78 - 175
Target Start/End: Complemental strand, 27959764 - 27959682
Alignment:
| Q |
78 |
tattattgatgtaaatagagtataacgaatcatcatgtatatattatatatgatcatatacaatttcaagtggcagcaaaaggcttaatcaattataa |
175 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27959764 |
tattattgatgtaaagagagtataacgaatcatcatgtatatat---------------acaatttcaagtggcagcaaaaggcttaatcaattataa |
27959682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 27959664 - 27959600
Alignment:
| Q |
180 |
tctatcataggaagttaggaacatctatctat----aatgtacttgtatctttgttgcacctttg |
240 |
Q |
| |
|
||||||||||||| | |||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
27959664 |
tctatcataggaaatcaggaacatctatctatctataatgtacttgtatctttgttgcatctttg |
27959600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University