View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9783_high_29 (Length: 243)
Name: NF9783_high_29
Description: NF9783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9783_high_29 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 166; Significance: 6e-89; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 2674377 - 2674590
Alignment:
| Q |
18 |
agtatcttggaaaacatcctttctctaaccctcttagtcaagtactctcccatgtaagcaaagctataatgttgaagcacattaacaaccattgagataa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
2674377 |
agtatcttggaaaacatcctttctctaaccctcttagtcaagtactctcccatgtaagcaaagctataatgttgaagtacattaacaaccaatgagataa |
2674476 |
T |
|
| Q |
118 |
cagccaaccctagaaagcaaaacgcgtagatcctaatttgtttcttgatctcatcatggtcctccataaaataaactgatataaccgaccccatcgcaaa |
217 |
Q |
| |
|
|||||||||||||||| |||||| | |||||||||||||| ||||| ||||||||||||||||||| |||||||||||||| ||||||||||| ||||| |
|
|
| T |
2674477 |
cagccaaccctagaaaacaaaacacatagatcctaatttgcttcttaatctcatcatggtcctccagaaaataaactgatacaaccgaccccaatgcaaa |
2674576 |
T |
|
| Q |
218 |
cgaatacacaggtt |
231 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
2674577 |
cgaatatacaggtt |
2674590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 2642540 - 2642752
Alignment:
| Q |
18 |
agtatcttggaaaacatcctttctctaaccctcttagtcaagtactctcccatgtaagcaaagctataatgttgaagcacattaacaaccattgagataa |
117 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2642540 |
agtatcttggaaaacattcgttctctaaccctcttagtcaagtattctcccatgtaagcaaagctataatgttgaagcacattaacaaccattgagataa |
2642639 |
T |
|
| Q |
118 |
cagccaaccctagaaagcaaaacgcgtagatcctaatttgtttcttgatctcatcatggtcctccataaaataaactgatataaccgaccccatcgcaaa |
217 |
Q |
| |
|
|||||||||||||||| ||||| || |||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||| |||||||| || || |
|
|
| T |
2642640 |
cagccaaccctagaaaacaaaatgcatagatcctaatttgcctcttgatctcatcatggtcttccaaaaaataaactgatataactgaccccattgcgaa |
2642739 |
T |
|
| Q |
218 |
cgaatacacaggt |
230 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
2642740 |
cgaatatacaggt |
2642752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 2570889 - 2571102
Alignment:
| Q |
18 |
agtatcttggaaaacatcctttctctaaccctcttagtcaagtactctcccatgtaagcaaagctataatgttgaagcacattaacaaccattgagataa |
117 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||| |
|
|
| T |
2570889 |
agtatcttagaaaacattttttctctaaccctcttagtcaaatactctcccatgtaagcaaagctataatgttgaagcatattaataaccattgaaataa |
2570988 |
T |
|
| Q |
118 |
cagccaaccctagaaagcaaaacgcgtagatcctaatttgtttcttgatctcatcatggtcctccataaaataaactgatataaccgaccccatcgcaaa |
217 |
Q |
| |
|
|||||| ||||||||| ||||| | || |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2570989 |
cagccagccctagaaaacaaaaaccataaatcctaatttgtttcttgatctcatcgtggtcctcaataaaataaactgatataaccgaccccattgcaaa |
2571088 |
T |
|
| Q |
218 |
cgaatacacaggtt |
231 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
2571089 |
cgaatacacaggtt |
2571102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 2590550 - 2590337
Alignment:
| Q |
18 |
agtatcttggaaaacatcctttctctaaccctcttagtcaagtactctcccatgtaagcaaagctataatgttgaagcacattaacaaccattgagataa |
117 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2590550 |
agtatcttggaaaacattcgttctctaaccctcttagtcaagtattctcccatgtaagcaaagctataatgttgaagtacattaacaaccattgagataa |
2590451 |
T |
|
| Q |
118 |
cagccaaccctagaaagcaaaacgcgtagatcctaatttgtttcttgatctcatcatggtcctccataaaataaactgatataaccgaccccatcgcaaa |
217 |
Q |
| |
|
|||||||||||||||| |||| || || ||||||||||| ||||||||||||||||||| ||||| ||||||||| |||||||||||||||| |||| |
|
|
| T |
2590450 |
cagccaaccctagaaaacaaagtgcataaatcctaatttgcttcttgatctcatcatggttctccaaaaaataaaccgatataaccgaccccaatccaaa |
2590351 |
T |
|
| Q |
218 |
cgaatacacaggtt |
231 |
Q |
| |
|
||||||||||||| |
|
|
| T |
2590350 |
agaatacacaggtt |
2590337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 2622105 - 2621892
Alignment:
| Q |
18 |
agtatcttggaaaacatcctttctctaaccctcttagtcaagtactctcccatgtaagcaaagctataatgttgaagcacattaacaaccattgagataa |
117 |
Q |
| |
|
|||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2622105 |
agtatcttagaaaacatcttttctctaatcctcttagtcaagtactctcccatgtaagcaaagctataatgttgaagcacattaacaaccattgagataa |
2622006 |
T |
|
| Q |
118 |
cagccaaccctagaaagcaaaacgcgtagatcctaatttgtttcttgatctcatcatggtcctccataaaataaactgatataaccgaccccatcgcaaa |
217 |
Q |
| |
|
|||||||||||||||| |||| || || ||||||||||| ||||||||||||||||||| ||||| ||||||||| |||||||||||||||| |||| |
|
|
| T |
2622005 |
cagccaaccctagaaaacaaagtgcataaatcctaatttgcttcttgatctcatcatggttctccaaaaaataaaccgatataaccgaccccaatccaaa |
2621906 |
T |
|
| Q |
218 |
cgaatacacaggtt |
231 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
2621905 |
tgaaaacacaggtt |
2621892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 2436693 - 2436518
Alignment:
| Q |
18 |
agtatcttggaaaacatcctttctctaaccctcttagtcaagtactctcccatgtaagcaaagctataatgttgaagcacattaacaaccattgagataa |
117 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||| ||| | ||| || ||| | |
|
|
| T |
2436693 |
agtatcttggaaaacattctttctctaatcctcttagtcaagtactctcccatgtaagcaaagctatactgttcaagcatattgaaaacaatagaggcca |
2436594 |
T |
|
| Q |
118 |
cagccaaccctagaaagcaaaacgcgtagatcctaatttgtttcttgatctcatcatggtcctccataaaataaac |
193 |
Q |
| |
|
||||||||||||||| ||||| || || |||||||| || ||||| ||||||||| |||| | || ||||||||| |
|
|
| T |
2436593 |
aagccaaccctagaaaacaaaaagcatacatcctaatctgcttcttcatctcatcacggtcattcagaaaataaac |
2436518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 2449896 - 2449737
Alignment:
| Q |
18 |
agtatcttggaaaacatcctttctctaaccctcttagtcaagtactctcccatgtaagcaaagctataatgttgaagcacattaacaaccattga-gata |
116 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| | |||||| ||||||||||||| ||||||||| |||| |
|
|
| T |
2449896 |
agtatcttggaaaacactctttctctaaccctcttagttaagtactctcccatgtatgcaaaacaataatgctgaagcacattaaaaaccattgaggata |
2449797 |
T |
|
| Q |
117 |
acagccaaccctagaaagcaaaacgcgtagatcctaatttgtttcttgatctcatcatggt |
177 |
Q |
| |
|
| || ||||||||||| |||| | || |||||||| || ||||||||||||||||||| |
|
|
| T |
2449796 |
a-ggctaaccctagaaaacaaagcatataaatcctaatctgcttcttgatctcatcatggt |
2449737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University