View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9783_high_36 (Length: 213)
Name: NF9783_high_36
Description: NF9783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9783_high_36 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 39979324 - 39979114
Alignment:
| Q |
1 |
gtgaaaattctgatgagctagctacaaaacatagtagtgtatgattgcaacatgttcttcctgaagagaggataagaggagatagccacactttagacaa |
100 |
Q |
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| T |
39979324 |
gtgaaaattctgatgagct--ctacaaaacatagtagtgtatgattgcaacatgttcttcctgaagagaggataagaggagatagccacactttagacaa |
39979227 |
T |
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| Q |
101 |
aatgattcctgcgaaacctatgctttctcacagattgaacatacttgtacctatggttcctgtgcattttttcccaatgcaaagaatagtcaatggtgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39979226 |
aatgattcctgcgaaacctatgctttctcacagattgaacatacttgtacctatggttcctgtgcattttttcccaatgcaaagaatagtcaatggtgtt |
39979127 |
T |
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| Q |
201 |
ctagattcttacc |
213 |
Q |
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||||||||||||| |
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| T |
39979126 |
ctagattcttacc |
39979114 |
T |
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