View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9783_high_4 (Length: 507)
Name: NF9783_high_4
Description: NF9783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9783_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 32 - 497
Target Start/End: Original strand, 3567677 - 3568132
Alignment:
| Q |
32 |
tacttcttgtgtgtgtcgtcagttgcaaaacctctgttgttgcggccgataattgtaacatttcttatttattctttatgaatttttatgtgttctatat |
131 |
Q |
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| T |
3567677 |
tacttcctgtttgtgtcgtcatttgcaaaacctctgttgttgcggccaataattgtaacatttcttatttattctttatgaatttttatgtgttctatat |
3567776 |
T |
|
| Q |
132 |
aaaacacttattttctaatgagtcaagtggcgaaatttacacgcagttagtgctaagaagtggagaattgcatattcaa-tcnnnnnnngagggaattgc |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||| |
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| T |
3567777 |
aaaacacttattttctaatgagtcaagtggcgaaatttacacgcagttagtgctgagaagtggagaattgcatattcaatttttttttttagggaattgc |
3567876 |
T |
|
| Q |
231 |
atattcaatctattgacttatataatatagtttagtttgtttaatatatattgtagatgatgaccaagtcaatacttaatatatgcacatagtatattnn |
330 |
Q |
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| T |
3567877 |
atattcaatctattaacttatataatatagtttagtttgtttaatatatattgtagatgattaccaagtcaatacttaatatatgcacataatatattaa |
3567976 |
T |
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| Q |
331 |
nnnnnnnnnnnnnnnnnnntatggcaggggttaatagaatttacccctaacatatcaaatgtatatacattcttttacaatttgagttgcaattaattac |
430 |
Q |
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||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3567977 |
acaaaaataaactaaaaaatatggtaggggttaatagaattt-----------atcaaatgtatatacattcttttacaatttgagttgcaattaattac |
3568065 |
T |
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| Q |
431 |
tataacttttgcttcttgtttatttgcagtgaaatgggaaatgctgcctattgaactagtgcctatg |
497 |
Q |
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| T |
3568066 |
tataacttttgcttcttgtttatttgcagtgaaatgggaaatgctgcctattgaactagtacctatg |
3568132 |
T |
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