View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9783_high_5 (Length: 483)

Name: NF9783_high_5
Description: NF9783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9783_high_5
NF9783_high_5
[»] chr3 (11 HSPs)
chr3 (1-464)||(39559235-39559698)
chr3 (13-136)||(50814856-50814979)
chr3 (13-136)||(50860885-50861008)
chr3 (321-465)||(50815338-50815482)
chr3 (321-465)||(50860382-50860526)
chr3 (342-464)||(49867977-49868099)
chr3 (341-456)||(49856599-49856714)
chr3 (219-283)||(49868244-49868308)
chr3 (411-456)||(49971725-49971770)
chr3 (153-201)||(49856951-49856999)
chr3 (315-451)||(49973059-49973195)
[»] scaffold0543 (2 HSPs)
scaffold0543 (342-464)||(2108-2230)
scaffold0543 (252-280)||(2380-2408)
[»] scaffold0492 (2 HSPs)
scaffold0492 (342-464)||(3654-3776)
scaffold0492 (252-280)||(3926-3954)
[»] chr7 (2 HSPs)
chr7 (347-432)||(19369959-19370044)
chr7 (407-463)||(19929351-19929407)


Alignment Details
Target: chr3 (Bit Score: 448; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Original strand, 39559235 - 39559698
Alignment:
Q  1 ccttacggcactttgtaaggtgattcgtacaggtagagaggttctaaacctatccaatctggtcagagctaacatttccaaaggttccatcgagtttgat 100  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  39559235 ccttacggcactttgtaaggttattcgtacagctagagaggttctaaacctatccaatttggtcagagctaacatttccaaaggttccatcgagtttgat 39559334  T
Q  101 tggctttataacgtgagccatctccgcatacgagagacctccccctgttatttacatggcatgtttcacaatttaacccatctggagcttatattagact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39559335 tggctttataacgtgagccatctccgcatacgagagacctccccctgttatttacatggcatgtttcacaatttaacccatctggagcttatattagact 39559434  T
Q  201 tctgcgaactcgcctcgttcaagtggaactggctgatggaacaatttcaatatttccccaaacttcaaactcttatcattcatgatgatgatgatatagt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39559435 tctgcgaactcgcctcgttcaagtggaactggctgatggaacaatttcaatatttccccaaacttcaaactcttatcattcatgatgatgatgatatagt 39559534  T
Q  301 aaacagtagtgatgatgacgaagattgggaggatccaactattgttccagaatgcctcttatctcatctcagaacatgctcgcttataaattatagccgc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39559535 aaacagtagtgatgatgacgaagattgggaggatccaactattgttccagaatgcctcttatctcatctcagaacatgctcgcttataaattatagccgc 39559634  T
Q  401 attaactgtgagtttcaattttctaaatatataatgcagaattcaagagtattaaggaccatga 464  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39559635 attaactgtgagtttcaatttgctaaatatataatgcagaattcaagagtattaaggaccatga 39559698  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 50814856 - 50814979
Alignment:
Q  13 ttgtaaggtgattcgtacaggtagagaggttctaaacctatccaatctggtcagagctaacatttccaaaggttccatcgagtttgattggctttataac 112  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||   | |||||||||||||||||||||    
T  50814856 ttgtatggtgattcgtacaggtagagaggttctaaacctatccaatttggtcagagctaacatttccaatggtttacttgagtttgattggctttataac 50814955  T
Q  113 gtgagccatctccgcatacgagag 136  Q
    ||||  | ||||||||||| ||||    
T  50814956 gtgaatcttctccgcatacaagag 50814979  T

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Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 50861008 - 50860885
Alignment:
Q  13 ttgtaaggtgattcgtacaggtagagaggttctaaacctatccaatctggtcagagctaacatttccaaaggttccatcgagtttgattggctttataac 112  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||   | |||||||||||||||||||||    
T  50861008 ttgtatggtgattcgtacaggtagagaggttctaaacctatccaatttggtcagagctaacatttccaatggtttacttgagtttgattggctttataac 50860909  T
Q  113 gtgagccatctccgcatacgagag 136  Q
    ||||  | ||||||||||| ||||    
T  50860908 gtgaatcttctccgcatacaagag 50860885  T

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Target: chr3; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 321 - 465
Target Start/End: Original strand, 50815338 - 50815482
Alignment:
Q  321 aagattgggaggatccaactattgttccagaatgcctcttatctcatctcagaacatgctcgcttataaattatagccgcattaactgtgagtttcaatt 420  Q
    ||||||||||||| ||||| ||||||||||||||||| ||||||||||| | ||||||||| |||  ||||||||| ||||| || ||||||||||||||    
T  50815338 aagattgggaggacccaacaattgttccagaatgccttttatctcatcttacaacatgctcccttcgaaattatagtcgcatcaattgtgagtttcaatt 50815437  T
Q  421 ttctaaatatataatgcagaattcaagagtattaaggaccatgat 465  Q
    | |||| ||||| || | ||||||||||||| |||| ||||||||    
T  50815438 tgctaactatatcatccggaattcaagagtactaagcaccatgat 50815482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 321 - 465
Target Start/End: Complemental strand, 50860526 - 50860382
Alignment:
Q  321 aagattgggaggatccaactattgttccagaatgcctcttatctcatctcagaacatgctcgcttataaattatagccgcattaactgtgagtttcaatt 420  Q
    ||||||||||||| ||||| ||||||||||||||||| ||||||||||| | ||||||||| |||  ||||||||| ||||| || ||||||||||||||    
T  50860526 aagattgggaggacccaacaattgttccagaatgccttttatctcatcttacaacatgctcccttcgaaattatagtcgcatcaattgtgagtttcaatt 50860427  T
Q  421 ttctaaatatataatgcagaattcaagagtattaaggaccatgat 465  Q
    | |||| ||||| || | ||||||||||||| |||| ||||||||    
T  50860426 tgctaactatatcatccggaattcaagagtactaagcaccatgat 50860382  T

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Target: chr3; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 342 - 464
Target Start/End: Complemental strand, 49868099 - 49867977
Alignment:
Q  342 ttgttccagaatgcctcttatctcatctcagaacatgctcgcttataaattatagccgcattaactgtgagtttcaattttctaaatatataatgcagaa 441  Q
    |||||||||||||||| | ||||||||| | ||| ||||| |||| |||||| |||||||| || |||||||||| |||| | |||||||||||||||||    
T  49868099 ttgttccagaatgcctttcatctcatcttacaacttgctcacttagaaattacagccgcataaattgtgagtttccatttgcaaaatatataatgcagaa 49868000  T
Q  442 ttcaagagtattaaggaccatga 464  Q
    |||| ||||| | ||||||||||    
T  49867999 ttcaggagtactgaggaccatga 49867977  T

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Target: chr3; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 341 - 456
Target Start/End: Complemental strand, 49856714 - 49856599
Alignment:
Q  341 attgttccagaatgcctcttatctcatctcagaacatgctcgcttataaattatagccgcattaactgtgagtttcaattttctaaatatataatgcaga 440  Q
    ||||| ||||||||||| ||||||||||| | ||||||||| |||| || |||||||||||| || || ||| |||||||| | |||||||| |||||||    
T  49856714 attgtaccagaatgccttttatctcatcttacaacatgctcacttagaagttatagccgcataaattgcgagcttcaatttgcaaaatatatcatgcaga 49856615  T
Q  441 attcaagagtattaag 456  Q
    ||||||||||| ||||    
T  49856614 attcaagagtactaag 49856599  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 283
Target Start/End: Complemental strand, 49868308 - 49868244
Alignment:
Q  219 tcaagtggaactggctgatggaacaatttcaatatttccccaaacttcaaactcttatcattcat 283  Q
    ||||||||||||||||||| ||||   || || ||||||| ||||||||||||||||||||||||    
T  49868308 tcaagtggaactggctgattgaactgcttgaaaatttccctaaacttcaaactcttatcattcat 49868244  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 411 - 456
Target Start/End: Complemental strand, 49971770 - 49971725
Alignment:
Q  411 agtttcaattttctaaatatataatgcagaattcaagagtattaag 456  Q
    ||||||||||| | ||||||||||||||||||||||||| ||||||    
T  49971770 agtttcaatttgcaaaatatataatgcagaattcaagagcattaag 49971725  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 49856999 - 49856951
Alignment:
Q  153 tacatggcatgtttcacaatttaacccatctggagcttatattagactt 201  Q
    ||||| || ||||||||||||||||||| |||||||||| ||| |||||    
T  49856999 tacatagcgtgtttcacaatttaacccacctggagcttagattggactt 49856951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 451
Target Start/End: Complemental strand, 49973195 - 49973059
Alignment:
Q  315 atgacgaagattgggaggatccaactattgttccagaatgcctcttatctcatctcagaacatgctcgcttataaattatagccgcattaactgtgagtt 414  Q
    ||||| ||||||||||||| | |   ||||||||| ||||||| |||||  ||||   ||||||||| |||| ||||||| |  |||| |  |||||| |    
T  49973195 atgacaaagattgggaggaacaagaaattgttccaaaatgccttttatcctatctatcaacatgctcacttagaaattattggggcatcacttgtgagct 49973096  T
Q  415 tcaattttctaaatatataatgcagaattcaagagta 451  Q
    ||| ||| | |||||||| ||| ||||||||||||||    
T  49973095 tcactttgcaaaatatattatgaagaattcaagagta 49973059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0543 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 342 - 464
Target Start/End: Complemental strand, 2230 - 2108
Alignment:
Q  342 ttgttccagaatgcctcttatctcatctcagaacatgctcgcttataaattatagccgcattaactgtgagtttcaattttctaaatatataatgcagaa 441  Q
    ||||||||  ||| || ||||||||||| | ||||||||| |||| |||||| || ||||| || |||||| ||| |||| | | |||||| ||||||||    
T  2230 ttgttccaagatgtcttttatctcatcttacaacatgctcacttagaaattacagtcgcataaattgtgagcttccatttgcaagatatatcatgcagaa 2131  T
Q  442 ttcaagagtattaaggaccatga 464  Q
    ||||||| ||||| | |||||||    
T  2130 ttcaagaatattacgcaccatga 2108  T

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Target: scaffold0543; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 252 - 280
Target Start/End: Complemental strand, 2408 - 2380
Alignment:
Q  252 atttccccaaacttcaaactcttatcatt 280  Q
    |||||||||||||||||||||||||||||    
T  2408 atttccccaaacttcaaactcttatcatt 2380  T

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Target: scaffold0492 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 342 - 464
Target Start/End: Complemental strand, 3776 - 3654
Alignment:
Q  342 ttgttccagaatgcctcttatctcatctcagaacatgctcgcttataaattatagccgcattaactgtgagtttcaattttctaaatatataatgcagaa 441  Q
    ||||||||  ||| || ||||||||||| | ||||||||| |||| |||||| || ||||| || |||||| ||| |||| | | |||||| ||||||||    
T  3776 ttgttccaagatgtcttttatctcatcttacaacatgctcacttagaaattacagtcgcataaattgtgagcttccatttgcaagatatatcatgcagaa 3677  T
Q  442 ttcaagagtattaaggaccatga 464  Q
    ||||||| ||||| | |||||||    
T  3676 ttcaagaatattacgcaccatga 3654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0492; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 252 - 280
Target Start/End: Complemental strand, 3954 - 3926
Alignment:
Q  252 atttccccaaacttcaaactcttatcatt 280  Q
    |||||||||||||||||||||||||||||    
T  3954 atttccccaaacttcaaactcttatcatt 3926  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 347 - 432
Target Start/End: Complemental strand, 19370044 - 19369959
Alignment:
Q  347 ccagaatgcctcttatctcatctcagaacatgctcgcttataaattatagccgcattaactgtgagtttcaattttctaaatatat 432  Q
    |||| |||||| ||||||||||||| ||||||||| |||| ||||||  ||||| | ||||||||| |||||||| | ||||||||    
T  19370044 ccagcatgccttttatctcatctcacaacatgctcacttagaaattactgccgcctaaactgtgagattcaatttgcaaaatatat 19369959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 407 - 463
Target Start/End: Original strand, 19929351 - 19929407
Alignment:
Q  407 tgtgagtttcaattttctaaatatataatgcagaattcaagagtattaaggaccatg 463  Q
    |||||| |||||||| | |||||||| ||||||||||||| |||||| | |||||||    
T  19929351 tgtgagcttcaatttgcaaaatatattatgcagaattcaaaagtattgaagaccatg 19929407  T

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