View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9783_low_1 (Length: 738)
Name: NF9783_low_1
Description: NF9783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9783_low_1 |
 | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 489; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 16 - 676
Target Start/End: Complemental strand, 20707792 - 20707129
Alignment:
| Q |
16 |
aaggcaagttgtaatatatgagcnnnnnnntgagtgt-gtatgcttagagacaatccttcataaacaatgcttgtaaattgttccattcttatttcatat |
114 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
20707792 |
aaggcaagttgtaatatatgagcaaaaaaatgagtgtagtatgcttagagacaatccttcataaacaacgcttgtaaattgttccattcttctttcatat |
20707693 |
T |
|
| Q |
115 |
tgcttgcaccatcatacccttgaccgtgaaggttagacacgtcaatgttatgtcgagaaaggacatcatacactggttccgtaagacttaaagatgtagt |
214 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20707692 |
tgcttgcaccatcatacccttgatcgtgaaggttagacacttcaatgttatgtcaagaaagtacatcatacactggttccgtaagacttaaagatgtagt |
20707593 |
T |
|
| Q |
215 |
gtttgtaacatatctgatatnnnnnnntgcagcaccctttgaaggtgaatattctagccatgaaagaaatttgctaaaccaagtgtcttgaaaccgtctt |
314 |
Q |
| |
|
|||||||||||||||||||| ||||||| || |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
20707592 |
gtttgtaacatatctgatattaaaaaatgcagcatccgttgaaggtaaatattctagccatgaaagaaatatgctaaaccaagtgtcttgaaaccgtctt |
20707493 |
T |
|
| Q |
315 |
ggatgtttctctccaccagacaaaggatattcttctatatataattaatatgaaccccaattcaaataagctcttcgtattttatcaacttgatttggtg |
414 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||| ||| |||||| ||| |
|
|
| T |
20707492 |
ggatgtttctctccaccagacaaaagatattcttctatacatatttaatatgaaccccaattcgaataagctcttcgtattttat-aacatgatttagtg |
20707394 |
T |
|
| Q |
415 |
gatatgtccatatttgggaacgctttccaggatcacgttctaaagtattcacaaaataagcttggttatgcacttcttcaattcctagaacttgaacaag |
514 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20707393 |
gatatgtccatatttgggaacgctttccaggatcacgttttaaagtattcacaaaataagcttggttatgcacttcttcaattcctagaacttgaacaag |
20707294 |
T |
|
| Q |
515 |
ttgatgtgtaggag---ttatctcttcttcaattcttggtacttcaacaggttaagcgccatctgttatcttttgctacttcttcaaataaaacgggttc |
611 |
Q |
| |
|
|||||||||| ||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||| |||||| |
|
|
| T |
20707293 |
ttgatgtgtaagagttattatctcttcttgaattcttggtacttcaacaggttatgcgccatctgttatcttttccttcttcttcaaataaaatgggttc |
20707194 |
T |
|
| Q |
612 |
tctgccatccatcacacttgcgagaaacttgtaatgttgcagtgagaattcatcacggttagcaa |
676 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||| |
|
|
| T |
20707193 |
tctgccatccatcacacttgcgagaaacttgtaatgttgcggtgagaattcattacagttagcaa |
20707129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 16 - 676
Target Start/End: Complemental strand, 20875836 - 20875173
Alignment:
| Q |
16 |
aaggcaagttgtaatatatgagcnnnnnnntgagtgt-gtatgcttagagacaatccttcataaacaatgcttgtaaattgttccattcttatttcatat |
114 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
20875836 |
aaggcaagttgtaatatatgagcaaaaaaatgagtgtagtatgcttagagacaatccttcataaacaacgcttgtaaattgttccattcttctttcatat |
20875737 |
T |
|
| Q |
115 |
tgcttgcaccatcatacccttgaccgtgaaggttagacacgtcaatgttatgtcgagaaaggacatcatacactggttccgtaagacttaaagatgtagt |
214 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20875736 |
tgcttgcaccatcatacccttgatcgtgaaggttagacacttcaatgttatgtcaagaaagtacatcatacactggttccgtaagacttaaagatgtagt |
20875637 |
T |
|
| Q |
215 |
gtttgtaacatatctgatatnnnnnnntgcagcaccctttgaaggtgaatattctagccatgaaagaaatttgctaaaccaagtgtcttgaaaccgtctt |
314 |
Q |
| |
|
|||||||||||||||||||| ||||||| || |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
20875636 |
gtttgtaacatatctgatattaaaaaatgcagcatccgttgaaggtaaatattctagccatgaaagaaatatgctaaaccaagtgtcttgaaaccgtctt |
20875537 |
T |
|
| Q |
315 |
ggatgtttctctccaccagacaaaggatattcttctatatataattaatatgaaccccaattcaaataagctcttcgtattttatcaacttgatttggtg |
414 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||| ||| |||||| ||| |
|
|
| T |
20875536 |
ggatgtttctctccaccagacaaaagatattcttctatacatatttaatatgaaccccaattcgaataagctcttcgtattttat-aacatgatttagtg |
20875438 |
T |
|
| Q |
415 |
gatatgtccatatttgggaacgctttccaggatcacgttctaaagtattcacaaaataagcttggttatgcacttcttcaattcctagaacttgaacaag |
514 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20875437 |
gatatgtccatatttgggaacgctttccaggatcacgttttaaagtattcacaaaataagcttggttatgcacttcttcaattcctagaacttgaacaag |
20875338 |
T |
|
| Q |
515 |
ttgatgtgtaggag---ttatctcttcttcaattcttggtacttcaacaggttaagcgccatctgttatcttttgctacttcttcaaataaaacgggttc |
611 |
Q |
| |
|
|||||||||| ||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||| |||||| |
|
|
| T |
20875337 |
ttgatgtgtaagagttattatctcttcttgaattcttggtacttcaacaggttatgcgccatctgttatcttttccttcttcttcaaataaaatgggttc |
20875238 |
T |
|
| Q |
612 |
tctgccatccatcacacttgcgagaaacttgtaatgttgcagtgagaattcatcacggttagcaa |
676 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||| |
|
|
| T |
20875237 |
tctgccatccatcacacttgcgagaaacttgtaatgttgcggtgagaattcattacagttagcaa |
20875173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 250 - 564
Target Start/End: Complemental strand, 41594734 - 41594420
Alignment:
| Q |
250 |
cctttgaaggtgaatattctagccatgaaagaaatttgctaaaccaagtgtcttgaaaccgtcttggatgtttctctccaccagacaaaggatattcttc |
349 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||| | || ||||||||||||||||||||| |
|
|
| T |
41594734 |
cctttgaaggtgaatattctagccatgaatgaaataagctaaaccaagtgtctttaaaccgtcttggatgatctcctgtaccagacaaaggatattcttc |
41594635 |
T |
|
| Q |
350 |
tatatataattaatatgaaccccaattcaaataagctcttcgtattttatcaacttgatttggtggatatgtccatatttgggaacgctttccaggatca |
449 |
Q |
| |
|
|| || | || ||||| ||||||||||| ||||||||||||||||| ||| || ||||||| |||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
41594634 |
taaatggatttgatatggaccccaattcagataagctcttcgtatttcatccacatgatttgctggaaatgtccatattggggaacgctttccaggatca |
41594535 |
T |
|
| Q |
450 |
cgttctaaagtattcacaaaataagcttggttatgcacttcttcaattcctagaacttgaacaagttgatgtgtaggagttatctcttcttcaattcttg |
549 |
Q |
| |
|
|||||||||| ||||| ||||| | | |||||||| ||||||||||| | |||| | |||| ||||| || ||||||| |||||||||||||||| |
|
|
| T |
41594534 |
cgttctaaagaattcaaaaaatcacccgcgttatgcaattcttcaattctttgaacatcaacaggttgagtcatatgagttatgtcttcttcaattcttg |
41594435 |
T |
|
| Q |
550 |
gtacttcaacaggtt |
564 |
Q |
| |
|
| |||| || ||||| |
|
|
| T |
41594434 |
gaactttaataggtt |
41594420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 64 - 234
Target Start/End: Complemental strand, 41595550 - 41595380
Alignment:
| Q |
64 |
gacaatccttcataaacaatgcttgtaaattgttccattcttatttcatattgcttgcaccatcatacccttgaccgtgaaggttagacacgtcaatgtt |
163 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||| |||||||||| || |||| ||| |
|
|
| T |
41595550 |
gacaatccttcataaacaatgcttgtaaaccgttccattctcctctcatattgcttgcaccatcatacccttgaccacgaaggttagaaacatcaaggtt |
41595451 |
T |
|
| Q |
164 |
atgtcgagaaaggacatcatacactggttccgtaagacttaaagatgtagtgtttgtaacatatctgatat |
234 |
Q |
| |
|
|||||||||||| | |||| |||||| |||| |||||||||||||||||||| | |||||| |||| |||| |
|
|
| T |
41595450 |
atgtcgagaaagtatatcacacactgcttccttaagacttaaagatgtagtgctggtaacacatctcatat |
41595380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 175
Target Start/End: Complemental strand, 31420788 - 31420677
Alignment:
| Q |
64 |
gacaatccttcataaacaatgcttgtaaattgttccattcttatttcatattgcttgcaccatcatacccttgaccgtgaaggttagacacgtcaatgtt |
163 |
Q |
| |
|
||||||| |||||||| | |||||||||| ||||||||| | |||||||||| ||||| |||||||||||||| ||| |||||| || |||| ||| |
|
|
| T |
31420788 |
gacaatctttcataaaaagtgcttgtaaaccattccattctcctctcatattgctagcaccgtcatacccttgaccacgaatgttagaaacatcaaggtt |
31420689 |
T |
|
| Q |
164 |
atgtcgagaaag |
175 |
Q |
| |
|
|||||||||||| |
|
|
| T |
31420688 |
atgtcgagaaag |
31420677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 1e-67; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 250 - 564
Target Start/End: Complemental strand, 43523341 - 43523027
Alignment:
| Q |
250 |
cctttgaaggtgaatattctagccatgaaagaaatttgctaaaccaagtgtcttgaaaccgtcttggatgtttctctccaccagacaaaggatattcttc |
349 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| | |||||||||| |||| ||||||||||||||| | || ||||||||||||||||||||| |
|
|
| T |
43523341 |
cctttgaaggtgaatattctagccatgaatgaaataagttaaaccaagtatctttaaaccgtcttggatgatctcctgtaccagacaaaggatattcttc |
43523242 |
T |
|
| Q |
350 |
tatatataattaatatgaaccccaattcaaataagctcttcgtattttatcaacttgatttggtggatatgtccatatttgggaacgctttccaggatca |
449 |
Q |
| |
|
|| || | || ||||| ||||||||||||||||||||||||||||| ||| || ||||||| |||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
43523241 |
taaatggatttgatatggaccccaattcaaataagctcttcgtatttcatccacatgatttgctggaaatgtccatattggggaacgctttccaggatca |
43523142 |
T |
|
| Q |
450 |
cgttctaaagtattcacaaaataagcttggttatgcacttcttcaattcctagaacttgaacaagttgatgtgtaggagttatctcttcttcaattcttg |
549 |
Q |
| |
|
|||||||||| ||||| ||||| | | |||||||| ||||||||||| | |||| | |||| ||||| || ||||||| |||||||||||||||| |
|
|
| T |
43523141 |
cgttctaaagaattcaaaaaatcacccgcgttatgcaattcttcaattctttgaacatcaacaggttgagtcatatgagttatgtcttcttcaattcttg |
43523042 |
T |
|
| Q |
550 |
gtacttcaacaggtt |
564 |
Q |
| |
|
| |||| || ||||| |
|
|
| T |
43523041 |
gaactttaataggtt |
43523027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 64 - 234
Target Start/End: Complemental strand, 43524156 - 43523986
Alignment:
| Q |
64 |
gacaatccttcataaacaatgcttgtaaattgttccattcttatttcatattgcttgcaccatcatacccttgaccgtgaaggttagacacgtcaatgtt |
163 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||| |||||||||| || |||| ||| |
|
|
| T |
43524156 |
gacaatccttcataaacaatgcttgtaaaccgttccattctcctctcatattgcttgcaccatcatacccttgaccacgaaggttagaaacatcaaggtt |
43524057 |
T |
|
| Q |
164 |
atgtcgagaaaggacatcatacactggttccgtaagacttaaagatgtagtgtttgtaacatatctgatat |
234 |
Q |
| |
|
|||||||||||| | |||| |||| | |||| |||||||||||||||||||| | |||||| |||| |||| |
|
|
| T |
43524056 |
atgtcgagaaagtatatcacacaccgcttccttaagacttaaagatgtagtgctggtaacacatctcatat |
43523986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 64 - 175
Target Start/End: Complemental strand, 5087517 - 5087406
Alignment:
| Q |
64 |
gacaatccttcataaacaatgcttgtaaattgttccattcttatttcatattgcttgcaccatcatacccttgaccgtgaaggttagacacgtcaatgtt |
163 |
Q |
| |
|
||||||| |||||||| | |||||||||| ||||||||| | |||||||||| |||||||||||||||||||| ||| |||||| || |||| ||| |
|
|
| T |
5087517 |
gacaatctttcataaaaagtgcttgtaaacaattccattctcctctcatattgctagcaccatcatacccttgaccacgaatgttagaaacatcaaggtt |
5087418 |
T |
|
| Q |
164 |
atgtcgagaaag |
175 |
Q |
| |
|
|||||||||||| |
|
|
| T |
5087417 |
atgtcgagaaag |
5087406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 258 - 464
Target Start/End: Complemental strand, 5086695 - 5086489
Alignment:
| Q |
258 |
ggtgaatattctagccatgaaagaaatttgctaaaccaagtgtcttgaaaccgtcttggatgtttctctccaccagacaaaggatattcttctatatata |
357 |
Q |
| |
|
||||||||||||||||||||| |||| ||| |||||||||||||||||||| ||||||||||||| |||||||||| ||||| | ||||| | |
|
|
| T |
5086695 |
ggtgaatattctagccatgaaggaaacaagctgaaccaagtgtcttgaaaccgccttggatgtttctgctcaccagacaagggatagttttctaatttcg |
5086596 |
T |
|
| Q |
358 |
attaatatgaaccccaattcaaataagctcttcgtattttatcaacttgatttggtggatatgtccatatttgggaacgctttccaggatcacgttctaa |
457 |
Q |
| |
|
|| ||| | |||||| || | ||| |||||||||||| ||| |||||| ||||||||| ||| ||| | ||||||| |||||||||||||||| |
|
|
| T |
5086595 |
tttgataaggaccccattttagatacgctcttcgtattgcatccttttgattcggtggatattgccaaattggaatacgcttttcaggatcacgttctaa |
5086496 |
T |
|
| Q |
458 |
agtattc |
464 |
Q |
| |
|
|| |||| |
|
|
| T |
5086495 |
agaattc |
5086489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 129; Significance: 2e-66; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 252 - 564
Target Start/End: Original strand, 22511700 - 22512012
Alignment:
| Q |
252 |
tttgaaggtgaatattctagccatgaaagaaatttgctaaaccaagtgtcttgaaaccgtcttggatgtttctctccaccagacaaaggatattcttcta |
351 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||| | | || |||||||||| |||||||||||| |
|
|
| T |
22511700 |
tttgaaggtgaatattctagccatgaatgaaataagctaaaccaagtgtctttaaaccgtcttggatgatcccctttaccagacaaatgatattcttcta |
22511799 |
T |
|
| Q |
352 |
tatataattaatatgaaccccaattcaaataagctcttcgtattttatcaacttgatttggtggatatgtccatatttgggaacgctttccaggatcacg |
451 |
Q |
| |
|
|| | || |||| ||||||||| | ||||||||||| ||||| ||| || ||||||| |||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
22511800 |
aatggatttgatatagaccccaatttagataagctcttcatatttcatccacatgatttgctggaaatgtccatattggggaacgctttccaggatcacg |
22511899 |
T |
|
| Q |
452 |
ttctaaagtattcacaaaataagcttggttatgcacttcttcaattcctagaacttgaacaagttgatgtgtaggagttatctcttcttcaattcttggt |
551 |
Q |
| |
|
|||||||| ||||| ||||| | | |||||||| ||||||||||| | | || | |||| ||||| |||| ||||||| ||||||||||||||||| |
|
|
| T |
22511900 |
ttctaaagaattcaaaaaatcacccgcgttatgcaattcttcaattctttgtacatcaacaggttgagttgtatgagttatgtcttcttcaattcttgga |
22511999 |
T |
|
| Q |
552 |
acttcaacaggtt |
564 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
22512000 |
acatcaacaggtt |
22512012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 68 - 234
Target Start/End: Original strand, 22510896 - 22511062
Alignment:
| Q |
68 |
atccttcataaacaatgcttgtaaattgttccattcttatttcatattgcttgcaccatcatacccttgaccgtgaaggttagacacgtcaatgttatgt |
167 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| | |||||||||||||||||| |||||||||||| ||||||||||| || |||| ||||||| |
|
|
| T |
22510896 |
atccttcataaacaatgcttgtaaaccgttccattctcctctcatattgcttgcaccattatacccttgaccatgaaggttagaaacatcaaggttatgt |
22510995 |
T |
|
| Q |
168 |
cgagaaaggacatcatacactggttccgtaagacttaaagatgtagtgtttgtaacatatctgatat |
234 |
Q |
| |
|
|||||||| | |||| |||| | |||| |||||||||||||||||||| | |||||| |||| |||| |
|
|
| T |
22510996 |
cgagaaagtatatcacacaccgcttccttaagacttaaagatgtagtgctagtaacacatctcatat |
22511062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 175
Target Start/End: Complemental strand, 2735419 - 2735308
Alignment:
| Q |
64 |
gacaatccttcataaacaatgcttgtaaattgttccattcttatttcatattgcttgcaccatcatacccttgaccgtgaaggttagacacgtcaatgtt |
163 |
Q |
| |
|
||||||| |||||||| | |||||||||| ||||||||| | |||||||||| ||||| |||||||||||||| ||| |||||| || |||| ||| |
|
|
| T |
2735419 |
gacaatctttcataaaaagtgcttgtaaaccattccattctcctctcatattgctagcaccgtcatacccttgaccacgaatgttagaaacatcaaggtt |
2735320 |
T |
|
| Q |
164 |
atgtcgagaaag |
175 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2735319 |
atgtcgagaaag |
2735308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 175
Target Start/End: Complemental strand, 40924465 - 40924354
Alignment:
| Q |
64 |
gacaatccttcataaacaatgcttgtaaattgttccattcttatttcatattgcttgcaccatcatacccttgaccgtgaaggttagacacgtcaatgtt |
163 |
Q |
| |
|
||||||| |||||||| | |||||||||| ||||||||| | |||||||||| ||||| |||||||||||||| ||| |||||| || |||| ||| |
|
|
| T |
40924465 |
gacaatctttcataaaaagtgcttgtaaaccattccattctcctctcatattgctagcaccgtcatacccttgaccacgaatgttagaaacatcaaggtt |
40924366 |
T |
|
| Q |
164 |
atgtcgagaaag |
175 |
Q |
| |
|
|||||||||||| |
|
|
| T |
40924365 |
atgtcgagaaag |
40924354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 64 - 208
Target Start/End: Original strand, 22127789 - 22127933
Alignment:
| Q |
64 |
gacaatccttcataaacaatgcttgtaaattgttccattcttatttcatattgcttgcaccatcatacccttgaccgtgaaggttagacacgtcaatgtt |
163 |
Q |
| |
|
||||||| |||||||| | |||||||||| ||||||||| | |||||||||| ||||| |||||||||||||| || |||||| ||||||| ||| |
|
|
| T |
22127789 |
gacaatctttcataaatagtgcttgtaaaccattccattctcctctcatattgctagcaccgtcatacccttgaccacaaatgttagaaacgtcaaagtt |
22127888 |
T |
|
| Q |
164 |
atgtcgagaaaggacatcatacactggttccgtaagacttaaaga |
208 |
Q |
| |
|
||||||| |||| | | || | |||| |||| ||||| ||||||| |
|
|
| T |
22127889 |
atgtcgaaaaagtataccacatactgcttccttaagagttaaaga |
22127933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 8e-63; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 250 - 564
Target Start/End: Original strand, 23123110 - 23123424
Alignment:
| Q |
250 |
cctttgaaggtgaatattctagccatgaaagaaatttgctaaaccaagtgtcttgaaaccgtcttggatgtttctctccaccagacaaaggatattcttc |
349 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||| | | || ||||||| ||||||||||||| |
|
|
| T |
23123110 |
cctttgaaggtgaatattctagccatgaataaaacaagctaaaccaagtgtctttaaaccgtcttggatgatcccctttaccagacgaaggatattcttc |
23123209 |
T |
|
| Q |
350 |
tatatataattaatatgaaccccaattcaaataagctcttcgtattttatcaacttgatttggtggatatgtccatatttgggaacgctttccaggatca |
449 |
Q |
| |
|
|| || | || ||||| ||||||||||| ||||||||||||||||| ||| || ||||||| |||| ||||||||||| ||||||||||| || ||||| |
|
|
| T |
23123210 |
taaatggatttgatatggaccccaattcagataagctcttcgtatttcatccacatgatttgctggaaatgtccatattggggaacgcttttcaagatca |
23123309 |
T |
|
| Q |
450 |
cgttctaaagtattcacaaaataagcttggttatgcacttcttcaattcctagaacttgaacaagttgatgtgtaggagttatctcttcttcaattcttg |
549 |
Q |
| |
|
||||||||| ||||| ||||| | | |||||||| |||||||||| | |||| | |||| ||||| |||| ||||||| |||||||||||||||| |
|
|
| T |
23123310 |
cgttctaaataattcaaaaaatcacccgcgttatgcaattcttcaattttttgaacatcaacatgttgagttgtatgagttatgtcttcttcaattcttg |
23123409 |
T |
|
| Q |
550 |
gtacttcaacaggtt |
564 |
Q |
| |
|
| || |||||||||| |
|
|
| T |
23123410 |
gaacatcaacaggtt |
23123424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 250 - 564
Target Start/End: Complemental strand, 14007585 - 14007281
Alignment:
| Q |
250 |
cctttgaaggtgaatattctagccatgaaagaaatttgctaaaccaagtgtcttgaaaccgtcttggatgtttctctccaccagacaaaggatattcttc |
349 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||| | || |||||||||||||||||||| |
|
|
| T |
14007585 |
cctttgaaggtgaatattctagccatgaatgaaataagctaaaccaagtgtctttaaaccgtcttggatgatctcctgtaccagacaaaggatattctt- |
14007487 |
T |
|
| Q |
350 |
tatatataattaatatgaaccccaattcaaataagctcttcgtattttatcaacttgatttggtggatatgtccatatttgggaacgctttccaggatca |
449 |
Q |
| |
|
|| ||||| ||||||||| | ||||||||||||||||| ||| || ||||||| |||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
14007486 |
---------ttgatatggaccccaatttagataagctcttcgtatttcatccacatgatttgctggaaatgtccatattggggaacgctttccaggatca |
14007396 |
T |
|
| Q |
450 |
cgttctaaagtattcacaaaataagcttggttatgcacttcttcaattcctagaacttgaacaagttgatgtgtaggagttatctcttcttcaattcttg |
549 |
Q |
| |
|
|||||||||| ||||| ||||| | | |||||||| ||||||||||| | |||| | |||| ||||| || ||||||| |||||||||||||||| |
|
|
| T |
14007395 |
cgttctaaagaattcaaaaaatcacccgcgttatgcaattcttcaattctttgaacatcaacaggttgagtcatatgagttatgtcttcttcaattcttg |
14007296 |
T |
|
| Q |
550 |
gtacttcaacaggtt |
564 |
Q |
| |
|
| |||| || ||||| |
|
|
| T |
14007295 |
gaactttaataggtt |
14007281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 64 - 234
Target Start/End: Original strand, 23122289 - 23122459
Alignment:
| Q |
64 |
gacaatccttcataaacaatgcttgtaaattgttccattcttatttcatattgcttgcaccatcatacccttgaccgtgaaggttagacacgtcaatgtt |
163 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||| |||||||||| || |||| ||| |
|
|
| T |
23122289 |
gacaatccttcataaacaatgcttgtaaaccgttccattctcctctcatattgcttgcaccatcatacccttgaccacgaaggttagaaacatcaaggtt |
23122388 |
T |
|
| Q |
164 |
atgtcgagaaaggacatcatacactggttccgtaagacttaaagatgtagtgtttgtaacatatctgatat |
234 |
Q |
| |
|
|||||||||||| | |||| |||||| |||| |||||||||||||||||||| | |||||| |||| |||| |
|
|
| T |
23122389 |
atgtcgagaaagtatatcacacactgcttccttaagacttaaagatgtagtgctagtaacacatctcatat |
23122459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 64 - 234
Target Start/End: Complemental strand, 14008401 - 14008231
Alignment:
| Q |
64 |
gacaatccttcataaacaatgcttgtaaattgttccattcttatttcatattgcttgcaccatcatacccttgaccgtgaaggttagacacgtcaatgtt |
163 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||| |||||| |||||||||| || |||| ||| |
|
|
| T |
14008401 |
gacaatccttcataaacaatgcttgtaaaccgttccattctcctctcatattgcttgcaccatcataccattgaccacgaaggttagaaacatcaaggtt |
14008302 |
T |
|
| Q |
164 |
atgtcgagaaaggacatcatacactggttccgtaagacttaaagatgtagtgtttgtaacatatctgatat |
234 |
Q |
| |
|
|||||||||||| | |||| |||| | |||| |||||||||||||||||||| | |||||| |||| |||| |
|
|
| T |
14008301 |
atgtcgagaaagtatatcacacaccgcttccttaagacttaaagatgtagtgctggtaacacatctcatat |
14008231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 175
Target Start/End: Original strand, 22271618 - 22271729
Alignment:
| Q |
64 |
gacaatccttcataaacaatgcttgtaaattgttccattcttatttcatattgcttgcaccatcatacccttgaccgtgaaggttagacacgtcaatgtt |
163 |
Q |
| |
|
||||||| |||||||| | |||||||||| ||||||||| | |||||||||| ||||| |||||||||||||| ||| |||||| || |||| ||| |
|
|
| T |
22271618 |
gacaatctttcataaaaagtgcttgtaaaccattccattctcctctcatattgctagcaccgtcatacccttgaccacgaatgttagaaacatcaaggtt |
22271717 |
T |
|
| Q |
164 |
atgtcgagaaag |
175 |
Q |
| |
|
|||||||||||| |
|
|
| T |
22271718 |
atgtcgagaaag |
22271729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 4e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 64 - 234
Target Start/End: Complemental strand, 50413895 - 50413725
Alignment:
| Q |
64 |
gacaatccttcataaacaatgcttgtaaattgttccattcttatttcatattgcttgcaccatcatacccttgaccgtgaaggttagacacgtcaatgtt |
163 |
Q |
| |
|
|||||||||| ||||||||||||| | || ||||||||| | || ||||||||| | ||||| ||||||||||| ||||||||||||| |||| ||| |
|
|
| T |
50413895 |
gacaatccttaataaacaatgcttattaaccattccattctcctctcgtattgcttgtatcatcacacccttgaccgcgaaggttagacacatcaaggtt |
50413796 |
T |
|
| Q |
164 |
atgtcgagaaaggacatcatacactggttccgtaagacttaaagatgtagtgtttgtaacatatctgatat |
234 |
Q |
| |
|
| |||||||||| | |||| |||||| |||| ||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
50413795 |
acgtcgagaaagcatatcacacactgcttccttaagagttaaagatgtagtgtttgtaacatatctcatat |
50413725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 175
Target Start/End: Original strand, 14798457 - 14798549
Alignment:
| Q |
83 |
tgcttgtaaattgttccattcttatttcatattgcttgcaccatcatacccttgaccgtgaaggttagacacgtcaatgttatgtcgagaaag |
175 |
Q |
| |
|
|||||||||| ||||||||| | |||||||||| ||||| |||||||||||||| ||| |||||| || |||| ||||||||||||||| |
|
|
| T |
14798457 |
tgcttgtaaaccattccattctcctctcatattgctagcaccgtcatacccttgaccacgaatgttagaaacatcaaggttatgtcgagaaag |
14798549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 398 - 549
Target Start/End: Original strand, 12869189 - 12869340
Alignment:
| Q |
398 |
atcaacttgatttggtggatatgtccatatttgggaacgctttccaggatcacgttctaaagtattcacaaaataagcttggttatgcacttcttcaatt |
497 |
Q |
| |
|
|||||| ||||||| |||| |||||| |||| |||||||||||||||||||||||||||||| ||||| ||||| | | |||||||| |||||||||| |
|
|
| T |
12869189 |
atcaacatgatttgctggaaatgtccgtattggggaacgctttccaggatcacgttctaaagaattcaaaaaatcacccgcgttatgcaattcttcaatt |
12869288 |
T |
|
| Q |
498 |
cctagaacttgaacaagttgatgtgtaggagttatctcttcttcaattcttg |
549 |
Q |
| |
|
| | |||| | |||| ||||| || ||||||| |||||||||||||||| |
|
|
| T |
12869289 |
ctttgaacatcaacaggttgagtcatatgagttatgtcttcttcaattcttg |
12869340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 175
Target Start/End: Complemental strand, 96091 - 95980
Alignment:
| Q |
64 |
gacaatccttcataaacaatgcttgtaaattgttccattcttatttcatattgcttgcaccatcatacccttgaccgtgaaggttagacacgtcaatgtt |
163 |
Q |
| |
|
||||||| |||||||| | |||||||||| ||||||||| | |||||||||| ||||| |||||||||||||| ||| |||||| || |||| ||| |
|
|
| T |
96091 |
gacaatctttcataaaaagtgcttgtaaaccattccattctcctctcatattgctagcaccgtcatacccttgaccacgaatgttagaaacatcaaggtt |
95992 |
T |
|
| Q |
164 |
atgtcgagaaag |
175 |
Q |
| |
|
|||||||||||| |
|
|
| T |
95991 |
atgtcgagaaag |
95980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 175
Target Start/End: Complemental strand, 41271 - 41179
Alignment:
| Q |
83 |
tgcttgtaaattgttccattcttatttcatattgcttgcaccatcatacccttgaccgtgaaggttagacacgtcaatgttatgtcgagaaag |
175 |
Q |
| |
|
|||||||||| ||||||||| | |||||||||| ||||| |||||||||||||| ||| |||||| || |||| ||||||||||||||| |
|
|
| T |
41271 |
tgcttgtaaaccattccattctcctctcatattgctagcaccgtcatacccttgaccacgaatgttagaaacatcaaggttatgtcgagaaag |
41179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 175
Target Start/End: Complemental strand, 27132206 - 27132127
Alignment:
| Q |
96 |
ttccattcttatttcatattgcttgcaccatcatacccttgaccgtgaaggttagacacgtcaatgttatgtcgagaaag |
175 |
Q |
| |
|
||||||||| | ||||||||| ||||| |||||||||||||| ||| |||||| || |||| ||||||||||||||| |
|
|
| T |
27132206 |
ttccattctcctctcatattgccagcaccgtcatacccttgaccacgaatgttagaaacatcaaggttatgtcgagaaag |
27132127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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