View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9783_low_11 (Length: 449)
Name: NF9783_low_11
Description: NF9783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9783_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 6 - 441
Target Start/End: Original strand, 2173228 - 2173664
Alignment:
| Q |
6 |
ttaaggactaaacctatgttttactcactttttcaatgtaatgagatgatgtaatagccactactcaagcacctgttttgccttgttgcatccctttttt |
105 |
Q |
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| T |
2173228 |
ttaaggactaaacctatgttttactcactttttcaatgtaatgagatgatgtaatagccactactcaagcacctgttttgccttgttgcatccctttttt |
2173327 |
T |
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| Q |
106 |
cctacagataattctaatgttgctagttttaatttgcttgatctcgtaacataagatatagttcctaacttataagggctactagaccgtcctcactcct |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2173328 |
cctacagataattctaatgttgctagttttaatttgcttgatctcgtaacataagatatagttcctaacttataagggctactagaccgtccccactcct |
2173427 |
T |
|
| Q |
206 |
acctaacttctaaacttccatataagagggttgccaaattgtcacaatcaaagtcaaatgnnnnnnntaaatacatgaaaacatctcgccaataaaaggg |
305 |
Q |
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| T |
2173428 |
acctaacttctaaacttccatataagagggttgccaaattgtcacaatcaaagtcaaatgaaaaaaataaatacatgaaaacatctcgccaataaaaggg |
2173527 |
T |
|
| Q |
306 |
gtcaactatttaatatgtgtccgatgtcctacacgtattggta-ccgatactgacacatgtgatgcattcaactaatttattttctcaaactataaccga |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2173528 |
gtcaactatttaatatgtgtccgatgtcctacacgtattggtacccgatactgacacatgcgatgcattcaactaatttattttctcaaactataaccga |
2173627 |
T |
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| Q |
405 |
tgtcggcaatcgccatgttagtgtcattctctctgct |
441 |
Q |
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||| |||||||| ||||||||||||||| | |||||| |
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| T |
2173628 |
tgttggcaatcggcatgttagtgtcattttgtctgct |
2173664 |
T |
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