View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9783_low_14 (Length: 436)
Name: NF9783_low_14
Description: NF9783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9783_low_14 |
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| [»] scaffold0291 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 19 - 430
Target Start/End: Complemental strand, 8416412 - 8416001
Alignment:
| Q |
19 |
aacaatagccgtggaagcaccgatgcgtactgcgtagccaagtatggtcagaaatggatcagaactagaactattcttgacacttttagtcctaaatgga |
118 |
Q |
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| T |
8416412 |
aacaatagccgtggaagcaccgatgcgtactgcgtagccaagtatggtcagaaatggatcagaactagaactattcttgacacttttagtcctaaatgga |
8416313 |
T |
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| Q |
119 |
atgaacaatacacatgggaagtttatgatccttgcactgtaataacactaggagtttttgataattgccatttaggtggtggaggagaaaaagctcctag |
218 |
Q |
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| T |
8416312 |
atgaacaatacacatgggaagtttatgatccttgcactgtaataacactaggagtttttgataattgccatttaggtggtggaggagaaaaagctcctag |
8416213 |
T |
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| Q |
219 |
tggtggaagcaatgcagctagggattcaaggatcggaaaggttaggattaggctctcaacacttgaagctaatagaatttacacaaactcttatccactt |
318 |
Q |
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| T |
8416212 |
tggtggaagcaatgcagctagggattcaaggatcggaaaggttaggattaggctctcaacacttgaagctaatagaatttacacaaactcttatccactt |
8416113 |
T |
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| Q |
319 |
cttgttttgcatcaaaatggtgtcaagaaaatgggtgagcttcaactagcaataaggttcactactctttcaatagctaacatggtttatatttatggac |
418 |
Q |
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| T |
8416112 |
cttgttttgcatcaaaatggtgtcaagaaaatgggtgagcttcaactagcaataaggttcactactctttcaatagctaacatggtttatatttatggac |
8416013 |
T |
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| Q |
419 |
aacctttgcttc |
430 |
Q |
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| T |
8416012 |
aacctttgcttc |
8416001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 34 - 425
Target Start/End: Complemental strand, 7915944 - 7915568
Alignment:
| Q |
34 |
agcaccgatgcgtactgcgtagccaagtatggtcagaaatggatcagaactagaactattcttgacacttttagtcctaaatggaatgaacaatacacat |
133 |
Q |
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| T |
7915944 |
agcacagatgcatactgtgttgctaaatatggtcagaaatggatcagaacaagaacacttttagacactttcagtcccaaatggaatgagcaatacacat |
7915845 |
T |
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| Q |
134 |
gggaagtttatgatccttgcactgtaataacactaggagtttttgataattgccatttaggtggtggaggagaaaaagctcctagtggtggaagcaatgc |
233 |
Q |
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| T |
7915844 |
gggaagtttatgatccttgcactgtcataacactaggtgtttttgacaattgtcatttaggt---------gaaaaagctccca---gtggaag---ttc |
7915760 |
T |
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| Q |
234 |
agctagggattcaaggatcggaaaggttaggattaggctctcaacacttgaagctaatagaatttacacaaactcttatccacttcttgttttgcatcaa |
333 |
Q |
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| T |
7915759 |
aattaaagattcaagaattggaaaggtaaggattaggctatcaacacttgaagccaataaaatttacaccaattcttatccacttcttgttttacaccaa |
7915660 |
T |
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| Q |
334 |
aatggtgtcaagaaaatgggtgagcttcaactagcaataaggttcactactctttcaatagctaacatggtttatatttatggacaaccttt |
425 |
Q |
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| T |
7915659 |
catggagttaagaaaatgggtgagcttcaactcacagtgaggttcactgcactctcactagctaacatgtttcatatttatggccaaccttt |
7915568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 21197835 - 21197795
Alignment:
| Q |
115 |
tggaatgaacaatacacatgggaagtttatgatccttgcac |
155 |
Q |
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| T |
21197835 |
tggaatgagcaatatacttgggaagtttatgatccttgcac |
21197795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 27253677 - 27253637
Alignment:
| Q |
115 |
tggaatgaacaatacacatgggaagtttatgatccttgcac |
155 |
Q |
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| T |
27253677 |
tggaatgagcaatatacttgggaagtttatgatccttgcac |
27253637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0291
Description:
Target: scaffold0291; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 102 - 201
Target Start/End: Complemental strand, 3680 - 3581
Alignment:
| Q |
102 |
ttttagtcctaaatggaatgaacaatacacatgggaagtttatgatccttgcactgtaataacactaggagtttttgataattgccatttaggtggtgga |
201 |
Q |
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| T |
3680 |
ttttaatccaaaatggaatgaacaatacacatgggaagttcatgatccttgcacagttataacttttggtgtttttgacaattgtcatttaggtggtgga |
3581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 114 - 155
Target Start/End: Original strand, 9528986 - 9529027
Alignment:
| Q |
114 |
atggaatgaacaatacacatgggaagtttatgatccttgcac |
155 |
Q |
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| T |
9528986 |
atggaatgagcaatacacatgggatgtttatgatccttgcac |
9529027 |
T |
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