View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9783_low_18 (Length: 344)
Name: NF9783_low_18
Description: NF9783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9783_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 51532438 - 51532754
Alignment:
| Q |
1 |
tttaacttaaaaccatgtatgtctcagtataatactgtatttagtgattaaacaagtggcaattcataacagttcttggtattgtatcaaagaaaaacta |
100 |
Q |
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| T |
51532438 |
tttaacttaaaaccatgtatgtctcagtataatactgtatttagtgattaaacaagtgggaattcataacagttcttggtattgtatcaaagaaaaacta |
51532537 |
T |
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| Q |
101 |
tgtaaaattaaaacggagacgggttattattaaccccaatttattaataagtacttgattattagatatattcagttcttttattctgtatatgatcttc |
200 |
Q |
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| T |
51532538 |
tgtaaaattaaaacggagacgggttattattaaccccaatttattaataagtacttgattattagatattttcagttcttttattctgtatatgatcttc |
51532637 |
T |
|
| Q |
201 |
aacatgcttttcattgtgtgtgtgaattttaaactctctgtttcgcctctagcattaattcatgcatcatcatcatactcacggatcggatcaaagagtt |
300 |
Q |
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| T |
51532638 |
aacatgcttttcattgtgtgtgtgaattttaaactctctgtttcgcctctagcattaattcatgcatcatcatcatactcacggatcggatcaaagagtt |
51532737 |
T |
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| Q |
301 |
ttggtgttaataacatt |
317 |
Q |
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| T |
51532738 |
ttggtgttaataacatt |
51532754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 138
Target Start/End: Original strand, 51526711 - 51526837
Alignment:
| Q |
14 |
catgtatgtctcagtataatactgtatttagtgattaaacaagtggc---aattcataacagttcttggtattgtatcaaagaaaaactatgtaaaatta |
110 |
Q |
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||||||||||| | ||||||| ||||||||||||||||| ||| | |||||| ||| |||||||||||||||||||||||||| ||||||||| | |
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| T |
51526711 |
catgtatgtctaaatataatattgtatttagtgattaaaagagttgttgtaattcacaacggttcttggtattgtatcaaagaaaaagtatgtaaaagca |
51526810 |
T |
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| Q |
111 |
aaacggagacgggttattattaacccca |
138 |
Q |
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| T |
51526811 |
aaa-ggacacgggttactgttaacccca |
51526837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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