View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9783_low_19 (Length: 328)
Name: NF9783_low_19
Description: NF9783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9783_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 11 - 312
Target Start/End: Complemental strand, 40200572 - 40200271
Alignment:
| Q |
11 |
catagggctatgtcacttgcaaatacaaaccaacctcttcgggagaattgtttgcagaaccagtccaaatcaaacaatagaagcccacatcatattttga |
110 |
Q |
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| T |
40200572 |
catagggttatgtcacttgcaaatacaaaccaacctcttcgggagaattgtttgcagaaccagtccaaatcaaacaatagaagcccacatcatattttga |
40200473 |
T |
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| Q |
111 |
cttgttgatttctgactttagtactgattaattgaaataaatttgacatgcagacttgaatttatggcgataattgaaaattcttaaaagtaatagtaag |
210 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40200472 |
cttgttgatttctgactttagtactgattaattgtaataaatttgacttgcagacttgaatttatggcgataattgaaaattcttaaaagtaatagtaag |
40200373 |
T |
|
| Q |
211 |
gatttggatcctttccatttctaaaaagaatggagaccttgattagtcattaaatagnnnnnnnnccttgctccgtaagtaagtaatatacaagcacact |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
40200372 |
gatttggatcctttccatttctaaaaagaatggagaccttgattagtcattaaatagttttttttccttgctccgtaagtaagtaatatacaagcacact |
40200273 |
T |
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| Q |
311 |
tt |
312 |
Q |
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|| |
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| T |
40200272 |
tt |
40200271 |
T |
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