View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9783_low_20 (Length: 322)
Name: NF9783_low_20
Description: NF9783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9783_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 2625360 - 2625128
Alignment:
| Q |
1 |
accaatcccgatccattatatttatttggaaaataaacgatagacgataaaaaatctcggaaatcaagaggttggttttgtggatattcttcgcgcaatg |
100 |
Q |
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| T |
2625360 |
accaatcccgatccattatatttatttggaaaataaacgatagacaataaaacatctcggaaatcagggggtcagttttgtggatattcttcgcgcaatg |
2625261 |
T |
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| Q |
101 |
caagaagttcccggaaaaggcagattcggtcccctctatccaactgggcgagtcagtttgtaagagtctctgtccgatattcccacnnnnnnnnnngtta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| | || |
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| T |
2625260 |
caagaagttcccggaaaaggcagattcggtcccctctatccaactgggtgagtcggtttgtaagagtctctgtccgatattcccac--ttttttttgcta |
2625163 |
T |
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| Q |
201 |
aaatggagtctccgacctgctcatgaaggacatgc |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
2625162 |
aaatggagtctccgacctgctcatgaaggacatgc |
2625128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 238 - 312
Target Start/End: Complemental strand, 2625038 - 2624964
Alignment:
| Q |
238 |
atggtagtgctcatacatggtttggcaaatgtccacctcttatgctcctaatcgtgattttcactataccctatg |
312 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
2625038 |
atggtagtgctcatacatggtttggcaaatgtgcacctcttacgctcctaaccgtgattttcactataccctatg |
2624964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 27244871 - 27244935
Alignment:
| Q |
1 |
accaatcccgatccattatatttatttggaaaataaacgatagacgataaaaaatctcggaaatc |
65 |
Q |
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|||||||||||||||||| |||| || |||||| |||||||||| |||||| |||||||||||| |
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| T |
27244871 |
accaatcccgatccattagatttgttcggaaaaacaacgatagacaataaaacatctcggaaatc |
27244935 |
T |
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