View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9783_low_21 (Length: 322)
Name: NF9783_low_21
Description: NF9783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9783_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 13 - 287
Target Start/End: Original strand, 5979793 - 5980066
Alignment:
| Q |
13 |
atcaagagtgtacaaatatgttgggatgtgatgtgttgatgatgtcacataaaggaatgataaaaataaaataaggtgtttaatgaannnnnnnncatat |
112 |
Q |
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| T |
5979793 |
atcaagggtgtacaaatatgttaggatgtgatgtgttgatgatgtcacataaaggaaagataaaaataaaataaggtgtttaatgtttttttttt-atat |
5979891 |
T |
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| Q |
113 |
gggaatggattctatccacctttaaaactcgctttttctcaaaatatcattctcatttgcaatgaatggtggagatttcaatagaccttcatgtcacatg |
212 |
Q |
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| T |
5979892 |
gggaatggattctatccacctttaaaacccgctttttctcaaaatatcattctcatttgtaatgaatggtggagatttcaatagaccttcatatcacatg |
5979991 |
T |
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| Q |
213 |
agaagatccactattgttagaaagttagaggttttcaaatataaatctcgttttaatatatgaacacaataactt |
287 |
Q |
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| T |
5979992 |
agaagatccactattgttaggaagttagaggtgttcaaatataaatctcgttttagtatatgaacacaataactt |
5980066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 279 - 322
Target Start/End: Original strand, 5980251 - 5980294
Alignment:
| Q |
279 |
caataacttttataaaatactagcggaaagactaacatgttttt |
322 |
Q |
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| T |
5980251 |
caataacttttataaaatactagcggaaagactaacatgttttt |
5980294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 222
Target Start/End: Complemental strand, 40268795 - 40268738
Alignment:
| Q |
165 |
tcatttgcaatgaatggtggagatttcaatagaccttcatgtcacatgagaagatcca |
222 |
Q |
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| T |
40268795 |
tcatttgcaatgaatggtggagattttaatggaccctcgtgtcacatgaaaggatcca |
40268738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 2287992 - 2287940
Alignment:
| Q |
163 |
tctcatttgcaatgaatggtggagatttcaatagaccttcatgtcacatgaga |
215 |
Q |
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| T |
2287992 |
tctccttttcaatggatgatggagatttcaatagactttcatgtcacatgaga |
2287940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 33434558 - 33434513
Alignment:
| Q |
163 |
tctcatttgcaatgaatggtggagatttcaatagaccttcatgtca |
208 |
Q |
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| T |
33434558 |
tctcattttcaatggatggtggagatttcaataaatcttcatgtca |
33434513 |
T |
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