View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9783_low_27 (Length: 288)
Name: NF9783_low_27
Description: NF9783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9783_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 34272988 - 34272706
Alignment:
| Q |
1 |
cccggtctagttgtatccaatatattgagaaacttaaatgtgacaaatcgaaccagaagcttagggtgcatacacacgttaaagtaattatgttatcatc |
100 |
Q |
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| T |
34272988 |
cccggtcgagttgtatccaatatattgagaaacttaaatgtgacaaatcgaaccaaaagcttagggttcatacacacgttagagtaattatgttatcatc |
34272889 |
T |
|
| Q |
101 |
tataatctatattatatcgagctagtagctactacaaagcatcgtcacgacctcataacattatcaaacataaacaccaactttttattagcaaaatcta |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34272888 |
tataatccatattatatcgagctagtagctactacaaagcatcgtcacgacctcataacattatcaaacataaacaccaactttttattagcaaaatcta |
34272789 |
T |
|
| Q |
201 |
cacatttatattaaagaaaaacatgcacatgtaaacaaattatgaaattgatacggaatcctcgagacatgccaacaccaaac |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34272788 |
cacatttatattaaagaaaaacatgcacatgtaaacaaattatgaaattgatacggaatcctcgagacatgccaacaccaaac |
34272706 |
T |
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