View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9783_low_29 (Length: 263)
Name: NF9783_low_29
Description: NF9783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9783_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 28 - 248
Target Start/End: Original strand, 52169729 - 52169935
Alignment:
| Q |
28 |
ctcttacaattaagactagggtcatctgaattaaaatccttcccatggtatatgatttacgtggtgaagacttattatatgacttatttcattgccatct |
127 |
Q |
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| T |
52169729 |
ctcttacaattaagattagggtcatctgaattaaaatccttcccatggtat--gatttacgtagtgaagact------------tatttcattgccatct |
52169814 |
T |
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| Q |
128 |
tataaaagcttttaaatttttcttaatgtttacttacaatatgacccgtgcgtcatcacgggtcggcgttctagtttaatatataattatgggtttgatt |
227 |
Q |
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| T |
52169815 |
tataaaagcttttaaattgttcttagtgtttacttgcaatatgacccgtgcgtcatcacgggtcggcgttctagttcaatatataattatgggtttgatt |
52169914 |
T |
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| Q |
228 |
ccctttttatgtattgttcct |
248 |
Q |
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||||||||||||||||||||| |
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| T |
52169915 |
ccctttttatgtattgttcct |
52169935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 49 - 204
Target Start/End: Complemental strand, 12852542 - 12852389
Alignment:
| Q |
49 |
tcatctgaattaaaatccttcccatggtatatgatttacgtggtgaagacttattatatgacttatttcattgccatcttataaaagcttttaaattttt |
148 |
Q |
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| T |
12852542 |
tcatcagaattaaaatccttcccatggtat--gattaatgtagtaaaaacttattatatgacttatttcattgttatcttataaaagtttttagattttt |
12852445 |
T |
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| Q |
149 |
cttaatgtttacttacaatatgacccgtgcgtcatcacgggtcggcgttctagttt |
204 |
Q |
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| T |
12852444 |
tttagattttactttcaatatgacccgtgcgtcattacgggtcagcattctagttt |
12852389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 55 - 204
Target Start/End: Complemental strand, 42153673 - 42153530
Alignment:
| Q |
55 |
gaattaaaatccttcccatggtatatgatttacgtggtgaagacttattatatgacttatttcattgccatcttataaaagcttttaaatttttcttaat |
154 |
Q |
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| T |
42153673 |
gaattaaaatccttcccatggtat--gattaatgtagtaaagatttattatatga----tttcattgtcatcttataaaagtttttaaatattttttagt |
42153580 |
T |
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| Q |
155 |
gtttacttacaatatgacccgtgcgtcatcacgggtcggcgttctagttt |
204 |
Q |
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| T |
42153579 |
atttactttcaatatgacccctgcgtcagcacgggtcatcgttctagttt |
42153530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 49 - 204
Target Start/End: Complemental strand, 30157692 - 30157539
Alignment:
| Q |
49 |
tcatctgaattaaaatccttcccatggtatatgatttacgtggtgaagacttattatatgacttatttcattgccatcttataaaagcttttaaattttt |
148 |
Q |
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| T |
30157692 |
tcatcggaattaaaatccttcccatggtat--gattaatgtcgtaaaaacttattatacgacttatttcattgccatcttataaaagtttttagattttt |
30157595 |
T |
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| Q |
149 |
cttaatgtttacttacaatatgacccgtgcgtcatcacgggtcggcgttctagttt |
204 |
Q |
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| T |
30157594 |
cttagtatttactttcaatatgacccatgcgtcagcacgggtcggcgttctagttt |
30157539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 203
Target Start/End: Original strand, 19633273 - 19633426
Alignment:
| Q |
49 |
tcatctgaattaaaatcc-ttcccatggtatatgatttacgtggtgaagacttattatatgacttatttcattgccatcttataaaagcttttaaatttt |
147 |
Q |
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| T |
19633273 |
tcatctgaattaaaatccgttcccatggtat--gattaatgtagtaaggatttattatatgacttattctattgccattttataaaagtttttaaaattt |
19633370 |
T |
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| Q |
148 |
tcttaatgtttacttacaatatgacccgtgcgtcatcacgggtcggcgttctagtt |
203 |
Q |
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| T |
19633371 |
ttttagaatttacttacaatataactcgtgcgtcagcacaggtcaacgttctagtt |
19633426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 130
Target Start/End: Complemental strand, 13028346 - 13028273
Alignment:
| Q |
55 |
gaattaaaatccttcccatggtatatgatttacgtggtgaagacttattatatgacttatttcattgccatcttat |
130 |
Q |
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| T |
13028346 |
gaattaaaatccttcccatggtat--gattaatgtagtaaagacttattatatgacttatttcatcgccattttat |
13028273 |
T |
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