View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9783_low_3 (Length: 555)
Name: NF9783_low_3
Description: NF9783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9783_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 511; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 11 - 541
Target Start/End: Complemental strand, 28818644 - 28818114
Alignment:
| Q |
11 |
caaagggattacttaaaatgacattttacaattccaaggatatatttgccaatttggaaagatcataaactatttggccgatgcatacaatttcgagaac |
110 |
Q |
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| T |
28818644 |
caaagggatcacttaaaatgacattttacaattccaagggtatatttgccaatttggaaagatcataaactatttggccgatgcatacaatttcgagaac |
28818545 |
T |
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| Q |
111 |
caattttcctattcactcttcatctaaaatccaaataaagaaagcattctaattttaccttgttttaagaagggtgcaatatcaatggtctggttatcag |
210 |
Q |
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| T |
28818544 |
caattttcctattcactcttcatctaaaatccaaataaagaaagcattctaattttaccttgttttaagaagggtgcaatatcaatggtctggttatcag |
28818445 |
T |
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| Q |
211 |
caaagaaggatttctctgagtatctcataaaacaaccagcatcaaatgccctaccatcagtattaggaaaacagctctgtatgttggtaaatccaactgt |
310 |
Q |
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| T |
28818444 |
caaagaaggatttctctgagtatctcataaaacaaccagcatcaaatgccctaccatcagtattaggaaaacagctctgtatgttggtaaatccaactgt |
28818345 |
T |
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| Q |
311 |
caggcaatctaaacaaccactttgagtgactgtttcagcacattgtgcaatagcatagattgcatttccagttccaacaacttgtgttttggtagctgca |
410 |
Q |
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| T |
28818344 |
caggcaatctaaacagccactttgagtgactgtttcagcacattgtgcaatagcatagattgcatttccagttccaacaacttgtgttttggtagctgca |
28818245 |
T |
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| Q |
411 |
aagaaaccaggaattttgggtgttgcagtttgtagatcctctagcacttgttgtgcagctgcattaaaagcagtggctccatttgctgcctggcttccac |
510 |
Q |
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| T |
28818244 |
aagaaaccaggaatttttggtgttgcagtttgtagatcctctaacacttgttgtgcagctgcattaaaagcagtggctccatttgctgcctggcttccac |
28818145 |
T |
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| Q |
511 |
atatcatactgtttccaggttgagttgtttg |
541 |
Q |
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| T |
28818144 |
atatcatactgtttccaggttgagttgtttg |
28818114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 189 - 372
Target Start/End: Complemental strand, 28834168 - 28833985
Alignment:
| Q |
189 |
atatcaatggtctggttatcagcaaagaaggatttctctgagtatctcataaaacaaccagcatcaaatgccctaccatcagtattaggaaaac-agctc |
287 |
Q |
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|||||||||||||| ||||||||||| |||| | |||||||||||||||||||||| || |||||| |||| |||||||| || ||||||| || |||| |
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| T |
28834168 |
atatcaatggtctgattatcagcaaaaaagggtgtctctgagtatctcataaaacaccctgcatcatatgctctaccatctgtgttaggaagacaagct- |
28834070 |
T |
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| Q |
288 |
tgtatgttggtaaatccaactgtcaggcaatctaaacaaccactttgagtgactgtttcagcacattgtgcaatagcatagattg |
372 |
Q |
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| T |
28834069 |
tgcaagttgttgtatccaactgtcaaacaatctaaacaaccactttcagtgactgtttcagcacactgtgcaatggcataaattg |
28833985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 189 - 360
Target Start/End: Complemental strand, 28825289 - 28825118
Alignment:
| Q |
189 |
atatcaatggtctggttatcagcaaagaaggatttctctgagtatctcataaaacaaccagcatcaaatgccctaccatcagtattaggaaaacagctct |
288 |
Q |
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|||||||||||||| ||||||||||| |||| | ||||||| |||||||||||||| || |||||| |||| ||||||||| | ||||||| ||| | | |
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| T |
28825289 |
atatcaatggtctgattatcagcaaaaaagggtgtctctgaatatctcataaaacaccctgcatcatatgctctaccatcactgttaggaagacaagttt |
28825190 |
T |
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| Q |
289 |
gtatgttggtaaatccaactgtcaggcaatctaaacaaccactttgagtgactgtttcagcacattgtgcaa |
360 |
Q |
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| T |
28825189 |
gcaagttactgtatccaactgccaaacaagctaaacaaccactttcagtgactgtttcagcacactgtgcaa |
28825118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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