View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9783_low_30 (Length: 262)

Name: NF9783_low_30
Description: NF9783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9783_low_30
NF9783_low_30
[»] chr8 (4 HSPs)
chr8 (1-259)||(15852138-15852396)
chr8 (1-259)||(15844920-15845189)
chr8 (37-259)||(15859173-15859383)
chr8 (123-259)||(15865953-15866089)
[»] chr2 (2 HSPs)
chr2 (174-250)||(30424931-30425007)
chr2 (123-226)||(8379528-8379631)


Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 15852138 - 15852396
Alignment:
Q  1 tatacaaggttcgaaccagaaacctcaaatttgaaatcaccccttttatatcagtaaagagagagatagatacaaaacttcatgtactaaaatcatttga 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  15852138 tatacaaggttcgaaccagaaagctcaaatttgaaatcaccccttttatatcagtaaagagagagatagttacaaaacttcatgtactaagatcatttga 15852237  T
Q  101 aatttaaacatgagaataatcgatacgtacaattttaagttgacttagtccttcgaagtttggattttggttcccaaaaacttgcaaaacttcctgcctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15852238 aatttaaacatgagaataatcgatacgtacaattttaagttgacttagtccttcgaagtttggattttggttcccaaaaacttgcaaaacttcctgcctt 15852337  T
Q  201 gcacgttcttgccattcaggatacctgcctaataacaccactgtccaaaccaccaaact 259  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  15852338 gcacgttcttgccattcaggatacctgcctaataacaccattgtccaaaccagcaaact 15852396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 15844920 - 15845189
Alignment:
Q  1 tatacaaggttcgaaccagaaacctcaaatttgaaatcaccccttttatatcagtaaagagagagatagatacaaaacttcatgtactaaaatcatttga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||  | ||||||||||| | ||||||||||||||| ||| |||| | || |||||||||    
T  15844920 tatacaaggttcgaaccagaaacctcaaatttgaaatcaccccaataatatcagtaaaaaaagagatagatacaaa-ctttatgtgccaagatcatttga 15845018  T
Q  101 aatttaa------------acatgagaataatcgatacgtacaattttaagttgacttagtccttcgaagtttggattttggttcccaaaaacttgcaaa 188  Q
    ||||| |            |||| ||| |||   |||| |||| ||||||||||||||| |||||||  |||||||||||||||||||||||||||||||    
T  15845019 aatttgatttgtaatttgaacataagagtaagtaatacatacagttttaagttgacttaatccttcgctgtttggattttggttcccaaaaacttgcaaa 15845118  T
Q  189 acttcctgccttgcacgttcttgccattcaggatacctgcctaataacaccactgtccaaaccaccaaact 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  15845119 acttcctgccttgcacgttcttgccattcaggatacctgcctaataacaccattgtccaaaccagcaaact 15845189  T

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Target: chr8; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 37 - 259
Target Start/End: Original strand, 15859173 - 15859383
Alignment:
Q  37 tcaccccttttatatcagtaaagagagagatagatacaaaacttcatgtactaaaatcatttgaaatttaaacatgagaataatcgatacgtacaatttt 136  Q
    |||||||||| |||||||| |||||| ||||| |||||||||| |||||  ||| |||||||||||||| ||||            |||| |||||||||    
T  15859173 tcacccctttaatatcagtgaagagaaagataaatacaaaactacatgtgataagatcatttgaaatttgaaca------------atacatacaatttt 15859260  T
Q  137 aagttgacttagtccttcgaagtttggattttggttcccaaaaacttgcaaaacttcctgccttgcacgttcttgccattcaggatacctgcctaataac 236  Q
    ||||||||||| |||||||  ||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  15859261 aagttgacttaatccttcgttgttaggattttggttcccaaaaacttgcaaaacttcctcccttgcacgtgcttgccattcaggatacctgcctaataac 15859360  T
Q  237 accactgtccaaaccaccaaact 259  Q
    |||| ||||||||||| ||||||    
T  15859361 accattgtccaaaccagcaaact 15859383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 123 - 259
Target Start/End: Original strand, 15865953 - 15866089
Alignment:
Q  123 atacgtacaattttaagttgacttagtccttcgaagtttggattttggttcccaaaaacttgcaaaacttcctgccttgcacgttcttgccattcaggat 222  Q
    |||| |||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  15865953 atacatacaattttaagttgatttaatccttcgatgtttggattttggttcccaaaaacttgcaaaacttcctgccttgcacgtgcttgccattcaggat 15866052  T
Q  223 acctgcctaataacaccactgtccaaaccaccaaact 259  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  15866053 acctgcctaataacaccattgtccaaaccagcaaact 15866089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 250
Target Start/End: Complemental strand, 30425007 - 30424931
Alignment:
Q  174 ccaaaaacttgcaaaacttcctgccttgcacgttcttgccattcaggatacctgcctaataacaccactgtccaaac 250  Q
    ||||||||||| || ||||| | |||||||||||||||||| ||||| ||||| |  || ||||||| |||||||||    
T  30425007 ccaaaaacttgtaatacttcttcccttgcacgttcttgccaatcagggtacctactcaacaacaccattgtccaaac 30424931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 226
Target Start/End: Original strand, 8379528 - 8379631
Alignment:
Q  123 atacgtacaattttaagttgacttagtccttcgaagtttggattttggttcccaaaaacttgcaaaacttcctgccttgcacgttcttgccattcaggat 222  Q
    |||| |||||| ||||||| | ||||||||||  ||| ||| |||| ||| ||||| | ||| || ||||||| ||| |||||||||||||| ||||| |    
T  8379528 atacttacaatcttaagtttatttagtccttcatagtctggttttttgttgccaaatatttgtaatacttcctccctagcacgttcttgccaatcagggt 8379627  T
Q  223 acct 226  Q
    ||||    
T  8379628 acct 8379631  T

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