View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9783_low_34 (Length: 253)
Name: NF9783_low_34
Description: NF9783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9783_low_34 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 14 - 253
Target Start/End: Original strand, 24820621 - 24820860
Alignment:
| Q |
14 |
cagagatcactccaggaagacacaattgttattttttgaggaagttaagaaagcagaaatgcaattaagtatcatacaggaatcaataccaagacttctc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
24820621 |
cagagatcactccaggaagacacaattgttattttttgaggaagttaagaaagcagaaatgcaaataagtatcatacaggaatcaataccaagacttttc |
24820720 |
T |
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| Q |
114 |
attaagggtctgtttggttcaacagaggggatgagtagacccttgtagcatttgatgtcacatttaataaatggtatttaagtccaaattttaaacaaat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24820721 |
attaagggtctgtttggttcaacagaggggatgagtagacccttgtagcatttgatgtcacatttaataaatggtatttaagtccaaattttaaacaaat |
24820820 |
T |
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| Q |
214 |
actatttcccctccgagttcctccactcttggatgggagc |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
24820821 |
actatttcccctccgagttcctccactcttggatgggagc |
24820860 |
T |
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