View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9783_low_4 (Length: 538)
Name: NF9783_low_4
Description: NF9783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9783_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-138; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 255 - 520
Target Start/End: Complemental strand, 25374964 - 25374699
Alignment:
| Q |
255 |
ttctgcaagactgtaaccctactcttgatgaaaacaccgactcttatgagttaagtccataaggagagtccaaaccaaaagagtagatcattagatggga |
354 |
Q |
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| T |
25374964 |
ttctgcaagactgtaaccctactcttgatgaaaacaccgactcttatgagttaagtccataaggagagcccaaaccaaaagagtagatcgttagatggga |
25374865 |
T |
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| Q |
355 |
atctcataataatacaatgatctttcttctcctacacattggctgactcatacattattcatgctaaactaaaacaaattaagaaagagaaaacaaaatt |
454 |
Q |
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| T |
25374864 |
atctcataataatacaatgacctttcttctcctacacattggctgactcatacattattcatgctaaactaaaacaaattaagaaagagagaacaaaatt |
25374765 |
T |
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| Q |
455 |
tcattggatctctaaaaccactgagaactagaatttagctgagctaacacgccgtagttggtatgt |
520 |
Q |
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| T |
25374764 |
tcattggatctctaaaaccactgagaactagaatttagctgagctaacacgccgtagttggtatgt |
25374699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 255
Target Start/End: Complemental strand, 25375258 - 25375015
Alignment:
| Q |
12 |
cataggcaacaagatcaccacccgtacnnnnnnnttatagaaaggcaacaaaggctaccaccagaacaacaagcaccaatgaaagacaccgcctataagg |
111 |
Q |
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| T |
25375258 |
cataggcaacaagatcaccacccgtagaaaaaaaataaagaaaggcaacaaagcctaccaccagaacaacaagcaccaatgaaagacaccgcctataaga |
25375159 |
T |
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| Q |
112 |
aaaaaaccaatccaacagtaagctcctattaatctccgaaagctccataaagtatgcactaacaaatggaatactccctcaccacaacaatcttcattcc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25375158 |
aaaaaaccaatccaacagtaagctcctattaatctccgaaagctccataaagtatgcactaacaaatggaatactccctcaccacaacaatcttcactcc |
25375059 |
T |
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| Q |
212 |
atcggcactgactcgctgatagcccttatttctttgatgacttt |
255 |
Q |
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| T |
25375058 |
atcggcactgactcgctgatagcccttatttctttgatgacttt |
25375015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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