View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9783_low_5 (Length: 530)
Name: NF9783_low_5
Description: NF9783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9783_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 146; Significance: 1e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 297 - 515
Target Start/End: Original strand, 30797325 - 30797560
Alignment:
| Q |
297 |
aaatatatgcttcttatagcgaaacatttcctcccgaatacattacagactgacttgtattatgtaactgcatctttagtggagcctcttattttttatc |
396 |
Q |
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| T |
30797325 |
aaatatatgtttcttatagcgaaacatttcctcccgaatgcatcac-gactgacttgtattatgtaactgcatctttagtggactctcttattttttatc |
30797423 |
T |
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| Q |
397 |
caatagcccatgttgtctgccaaaggaaatctaagtgtgcaacaacttcgtgaa------------------tcccttgaaatagtactgctgtcaagaa |
478 |
Q |
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| T |
30797424 |
caatagcctatgttgtctgccaaaggaaatctaagtgtgcaacaacttcgtgaattgcttgctataagtttttcccttgaaatagtactgctgtcaagaa |
30797523 |
T |
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| Q |
479 |
aaaggtctattcttcaaacaaaatgtgagttttcctt |
515 |
Q |
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| T |
30797524 |
aaaggtctattcttcaaacaaaatgtgagttttcctt |
30797560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 30797240 - 30797319
Alignment:
| Q |
11 |
cagagatctaaaggctattagtttcccacgttttctggaaattctcgtgatgcaattattcgctataacaagcatttccg |
90 |
Q |
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| T |
30797240 |
cagagatctaaaggctattagtttcccacgttttctggaaattcttgtgatgcaattattcgctttaacaagcatttccg |
30797319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 303 - 450
Target Start/End: Original strand, 49904516 - 49904663
Alignment:
| Q |
303 |
atgcttcttatagcgaaacatttcctcccgaatacattacagactgacttgtattatgtaactgcatctttagtggagcctctta-ttttttatccaata |
401 |
Q |
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| T |
49904516 |
atgcttcttacaacgaaacacttcctcccgaatgcatccc-gatggagttgtattaggtaactgcatctttagtggaccctcttatttttttatacaaca |
49904614 |
T |
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| Q |
402 |
gcccatgttgtctgccaaaggaaatctaagtgtgcaacaacttcgtgaa |
450 |
Q |
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| T |
49904615 |
tcccatgttgtctgccataggagatctaagcgtgcagctaattcgtgaa |
49904663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 335
Target Start/End: Original strand, 5945405 - 5945437
Alignment:
| Q |
303 |
atgcttcttatagcgaaacatttcctcccgaat |
335 |
Q |
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| T |
5945405 |
atgcttcctatagcgaaacatttcctcccgaat |
5945437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 359 - 430
Target Start/End: Complemental strand, 1207331 - 1207260
Alignment:
| Q |
359 |
tgtaactgcatctttagtggagcctcttattttttatccaatagcccatgttgtctgccaaaggaaatctaa |
430 |
Q |
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| T |
1207331 |
tgtaattgcatctttagtggaccctccttatttttatccaacagtccatgttgtctgccaaaggaaatctaa |
1207260 |
T |
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