View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9783_low_50 (Length: 210)
Name: NF9783_low_50
Description: NF9783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9783_low_50 |
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Alignment Details
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 14588733 - 14588554
Alignment:
| Q |
19 |
agaacgactaaattttcttccagaatcattcttcacagccgactgtattctcataacctcgtaacgtttgagatgaatggttgtttggaaaggaacccat |
118 |
Q |
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| T |
14588733 |
agaacgactaaattttcttccataatcattcttcacagctgactgtattctcataacctcgtaacgtttgagatgaatggttgtttggaaaggaacccat |
14588634 |
T |
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| Q |
119 |
tttggtggactatacaagtctatgtcggttcgttcccctggtggattaaagaaaaccaaggttcgagctgcacctatgct |
198 |
Q |
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| T |
14588633 |
tttggtggactatacaagtctatgtcggttcgttcccctggtggattaaagaaaaccaagttccgagctgcgcctatgct |
14588554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 14622391 - 14622232
Alignment:
| Q |
19 |
agaacgactaaattttcttccagaatcattcttcacagccgactgtattctcataacctcgtaacgtttgagatgaatggttgtttggaaaggaacccat |
118 |
Q |
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| T |
14622391 |
agaacgactaaattttcttccataatcattcttcacagttgactgtattctcataacctcgtaacgtttgagatgaatggttgtttggaaaggaacccat |
14622292 |
T |
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| Q |
119 |
tttggtggactatacaagtctatgtcggttcgttcccctggtggattaaagaaaaccaag |
178 |
Q |
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| T |
14622291 |
tttggtggactatacaagtctatgtcggttcgttcccctggtggattaaagaaacccaag |
14622232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 71 - 126
Target Start/End: Complemental strand, 1361611 - 1361556
Alignment:
| Q |
71 |
ataacctcgtaacgtttgagatgaatggttgtttggaaaggaacccattttggtgg |
126 |
Q |
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| T |
1361611 |
ataatctcataaggtttgagatgaatggttgtttgaaaaggaacccattttggtgg |
1361556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 133
Target Start/End: Complemental strand, 20492380 - 20492331
Alignment:
| Q |
84 |
gtttgagatgaatggttgtttggaaaggaacccattttggtggactatac |
133 |
Q |
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| T |
20492380 |
gtttgaaatgaatgtttgttttgaaaggaacccactttggtggactatac |
20492331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 172
Target Start/End: Complemental strand, 11530203 - 11530122
Alignment:
| Q |
91 |
atgaatggttgtttggaaaggaacccattttggtggactatacaagtctatgtcggttcgttcccctggtggattaaagaaa |
172 |
Q |
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| T |
11530203 |
atgaatggttgtttcgaaaggaacccactttggtgggctatacctgtctatgttgatttgatcctttggtggattaaagaaa |
11530122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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