View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9783_low_51 (Length: 206)
Name: NF9783_low_51
Description: NF9783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9783_low_51 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 3e-93; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 51212653 - 51212825
Alignment:
| Q |
18 |
gataaatttgatagagagattttatgatccacaggatggtcaaattatcattgacggtattgacctcagagaatttcaattgaaatggatcagacagaaa |
117 |
Q |
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| T |
51212653 |
gataaatttgatagagagattttatgatccacaggatggtcaaattatcattgacggtattgacctcagagaatttcaattgaaatggatcagacagaaa |
51212752 |
T |
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| Q |
118 |
ataggcctagtgagtcaggaaccagttctctttacttgtagcattaaagagaacattgcctatggtaaggatg |
190 |
Q |
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| T |
51212753 |
ataggcctagtgagtcaggaaccagttctctttacttgtagcattaaagagaacattgcctatggtaaggatg |
51212825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 24 - 190
Target Start/End: Original strand, 51199513 - 51199679
Alignment:
| Q |
24 |
tttgatagagagattttatgatccacaggatggtcaaattatcattgacggtattgacctcagagaatttcaattgaaatggatcagacagaaaataggc |
123 |
Q |
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| T |
51199513 |
tttgatagagagattttatgatccacaggctggtgaagttctcattgacggtgtcaacctcaaagaatttcaactgaaatggatcagacagaaaataggc |
51199612 |
T |
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| Q |
124 |
ctagtgagtcaggaaccagttctctttacttgtagcattaaagagaacattgcctatggtaaggatg |
190 |
Q |
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| T |
51199613 |
ctagtcagccaggaacctgttctctttacttgcagcattaaagagaacattgcatatggcaaggatg |
51199679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 24 - 188
Target Start/End: Original strand, 51145524 - 51145688
Alignment:
| Q |
24 |
tttgatagagagattttatgatccacaggatggtcaaattatcattgacggtattgacctcagagaatttcaattgaaatggatcagacagaaaataggc |
123 |
Q |
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| T |
51145524 |
tttgatagagagattctatgatccaacagatggtgaagttctcattgacggtatcaacctcaaagaatttcaactaaaatggatcagacagaaaataggc |
51145623 |
T |
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| Q |
124 |
ctagtgagtcaggaaccagttctctttacttgtagcattaaagagaacattgcctatggtaagga |
188 |
Q |
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| T |
51145624 |
ctagtcagccaggaacccgttctctttacttgtagcattaaggagaatattgcatatggcaagga |
51145688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 24 - 188
Target Start/End: Original strand, 51156665 - 51156829
Alignment:
| Q |
24 |
tttgatagagagattttatgatccacaggatggtcaaattatcattgacggtattgacctcagagaatttcaattgaaatggatcagacagaaaataggc |
123 |
Q |
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| T |
51156665 |
tttgatagagagattctatgatccaacagatggtgaagttctcattgacggtatcaacctcaaagaatttcaactaaaatggatcagacagaaaataggc |
51156764 |
T |
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| Q |
124 |
ctagtgagtcaggaaccagttctctttacttgtagcattaaagagaacattgcctatggtaagga |
188 |
Q |
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| T |
51156765 |
ctagtcagccaggaacccgttctctttacttgtagcattaaggagaatattgcatatggcaagga |
51156829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 28 - 190
Target Start/End: Complemental strand, 29937400 - 29937238
Alignment:
| Q |
28 |
atagagagattttatgatccacaggatggtcaaattatcattgacggtattgacctcagagaatttcaattgaaatggatcagacagaaaataggcctag |
127 |
Q |
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| T |
29937400 |
atagagagattctatgatccaacaaatggtgaagttctcattgacggtatcagcctcaaagaatttaatctgaaatggatcagacagaaaataggcctag |
29937301 |
T |
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| Q |
128 |
tgagtcaggaaccagttctctttacttgtagcattaaagagaacattgcctatggtaaggatg |
190 |
Q |
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| T |
29937300 |
tcagccaggaacccgttctctttacttgtagcattaagaagaatatttcctatggcaaggatg |
29937238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 5e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 24 - 190
Target Start/End: Complemental strand, 49737355 - 49737189
Alignment:
| Q |
24 |
tttgatagagagattttatgatccacaggatggtcaaattatcattgacggtattgacctcagagaatttcaattgaaatggatcagacagaaaataggc |
123 |
Q |
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||||||||||||||||||||||||||||| |||| ||||| |||||||| ||| |||||| |||||||||| |||||||||||||||| ||||||||| |
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| T |
49737355 |
tttgatagagagattttatgatccacagggtggtgaaattctcattgacaatatcaacctcaaagaatttcaactgaaatggatcagacaaaaaataggc |
49737256 |
T |
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| Q |
124 |
ctagtgagtcaggaaccagttctctttacttgtagcattaaagagaacattgcctatggtaaggatg |
190 |
Q |
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| T |
49737255 |
ttagtcagtcaggaaccagttctctttacttgtagcattaaagagaacattgcctatggtaaggatg |
49737189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 26 - 190
Target Start/End: Original strand, 36285873 - 36286037
Alignment:
| Q |
26 |
tgatagagagattttatgatccacaggatggtcaaattatcattgacggtattgacctcagagaatttcaattgaaatggatcagacagaaaataggcct |
125 |
Q |
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|||||||||| ||||||||||||| | ||| ||| || |||||||||| || || | | ||||||||| | |||||||| ||||||||||||||| | |
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| T |
36285873 |
tgatagagaggctttatgatccacaagctggacaagttctcattgacggaatcaacgtaaaagaatttcagcttaaatggattagacagaaaataggctt |
36285972 |
T |
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| Q |
126 |
agtgagtcaggaaccagttctctttacttgtagcattaaagagaacattgcctatggtaaggatg |
190 |
Q |
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|| |||||||| |||||||| ||||| | ||||||||||| || ||| ||||||||||||||| |
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| T |
36285973 |
ggtcagtcaggagccagttctgtttaccggcagcattaaagaaaatattacctatggtaaggatg |
36286037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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