View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9783_low_9 (Length: 478)
Name: NF9783_low_9
Description: NF9783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9783_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 15 - 341
Target Start/End: Original strand, 34330100 - 34330426
Alignment:
| Q |
15 |
acctgtgcagggacattttctccttaaaaaccaatttggtttagaaagtgatgatttgtgtttgttgctgttgttaggatttggatttgaagggtttttg |
114 |
Q |
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| T |
34330100 |
acctgtgcagggacattttctccttaaaaaccaatttggtttagaaagtgatgatttgtgtttgttgctgttgttaggatttggatttgaagggtttttg |
34330199 |
T |
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| Q |
115 |
atgttaactgagatagcacctgctgggtgtgataacaaaccttgttgactgttccagctagcttctgatgaagctgttggtgttgcagcatggaaagaac |
214 |
Q |
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| T |
34330200 |
atgttaactgagatagcacctgctgggtgtgataacaaaccttgttgactgttccagctagcttctgatgaagctgttggtgttgcagcatggaaagaac |
34330299 |
T |
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| Q |
215 |
gagctcgatagtttctgatgtttgcataaccatccattgatgaagcagatgagtatcttgttgtatctggtataacaatgctttctgtttcattgttaac |
314 |
Q |
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| T |
34330300 |
gagctcgatagtttctgatgtttgcataaccatccattgatgaagcagatgagtatcttgttgtatctggtataacaatgctttctgtttcattgttaac |
34330399 |
T |
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| Q |
315 |
attgatcactactggtgaaactctgct |
341 |
Q |
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| T |
34330400 |
attgatcactactggtgaaactctgct |
34330426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 409 - 461
Target Start/End: Original strand, 34330494 - 34330546
Alignment:
| Q |
409 |
ccttcgttgaagtatttgtgtgcgtcgaatatgctgagttctgaggtgggatc |
461 |
Q |
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| T |
34330494 |
ccttcgttgaagtatttgtgtgcgtcgaatatgctgagttctgaggtgggatc |
34330546 |
T |
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