View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9785_high_1 (Length: 297)

Name: NF9785_high_1
Description: NF9785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9785_high_1
NF9785_high_1
[»] chr1 (16 HSPs)
chr1 (15-282)||(48179339-48179606)
chr1 (69-277)||(47873854-47874062)
chr1 (70-230)||(40140972-40141136)
chr1 (90-224)||(2417749-2417886)
chr1 (77-226)||(40027189-40027337)
chr1 (69-226)||(49287413-49287567)
chr1 (80-284)||(33860546-33860750)
chr1 (80-284)||(33920173-33920377)
chr1 (89-224)||(37847219-37847359)
chr1 (80-280)||(45196748-45196954)
chr1 (71-287)||(49440278-49440494)
chr1 (64-146)||(41186128-41186210)
chr1 (155-280)||(49540497-49540622)
chr1 (97-170)||(49540418-49540491)
chr1 (248-281)||(40027131-40027164)
chr1 (160-224)||(37850074-37850138)
[»] chr3 (3 HSPs)
chr3 (78-281)||(14964282-14964485)
chr3 (79-145)||(540434-540500)
chr3 (77-145)||(485609-485677)
[»] chr7 (1 HSPs)
chr7 (89-230)||(32347364-32347505)
[»] chr5 (2 HSPs)
chr5 (87-230)||(31266823-31266969)
chr5 (105-146)||(1204363-1204404)
[»] chr6 (3 HSPs)
chr6 (82-145)||(34606051-34606114)
chr6 (82-145)||(34727328-34727391)
chr6 (82-145)||(33465645-33465708)


Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 15 - 282
Target Start/End: Complemental strand, 48179606 - 48179339
Alignment:
Q  15 agagaccacaagttaaacggtgtacaataagcaaattttttgttttaggaaaaataacacgttgtacaataagcaagttactcaactagagaataatcta 114  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48179606 agagaccacaggttaaacggtgtacaataagcaaattttttgttttaggaaaaataacacgttgtacaataagcaagttactcaactagagaataatcta 48179507  T
Q  115 cttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctggaagcgtaatgcatttttgcaattttttatcatctcc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48179506 cttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctggaagcgtaatgcatttttgcaattttttatcatctcc 48179407  T
Q  215 tgaatacacactgcataccgcagataaaataccgatgacatacacagagtttctctcatatccccaca 282  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48179406 tgaatacacactgcatactgcagataaaataccgatgacatacacagagtttctctcatatccccaca 48179339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 69 - 277
Target Start/End: Complemental strand, 47874062 - 47873854
Alignment:
Q  69 taacacgttgtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccat 168  Q
    ||||||| ||||||||| ||||||||||||||| ||||| |||| || |||||| || |||| |||||||| |||||  ||||  |||||  || |||||    
T  47874062 taacacgatgtacaatatgcaagttactcaactggagaaaaatcaacctcatatcgtagatgtctaaaacaacaatccaacatcagggaatgtgatccat 47873963  T
Q  169 gaagagctggaagcgtaatgcatttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttct 268  Q
    || |||||||||||||||||||||||| ||||||||||||||| ||||||||||| || ||||  | |||| ||  || |||| ||||||||||||| ||    
T  47873962 gaggagctggaagcgtaatgcatttttacaattttttatcatcccctgaatacactctacatagtgtagatgaagaactgatggcatacacagagttgct 47873863  T
Q  269 ctcatatcc 277  Q
    |||||||||    
T  47873862 ctcatatcc 47873854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 70 - 230
Target Start/End: Complemental strand, 40141136 - 40140972
Alignment:
Q  70 aacacgttgtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccat- 168  Q
    |||||| ||||||| | ||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||  ||||||| |||  ||||||||     
T  40141136 aacacggtgtacaacatgcaagttactcaactagagaataatctacctcatattgtagatgtctaaaacaccaatccaacatgtgagaatctgttccata 40141037  T
Q  169 --gaagagctggaagcgtaatgcatttttgcaa-ttttttatcatctcctgaatacacactgcat 230  Q
      || ||||||||| ||| || |||||||| || |||||||||||| ||||||||||||||||||    
T  40141036 aggaggagctggaaacgtgatacatttttgtaatttttttatcatcgcctgaatacacactgcat 40140972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 90 - 224
Target Start/End: Original strand, 2417749 - 2417886
Alignment:
Q  90 agttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccat---gaagagctggaagcgtaa 186  Q
    ||||||||||||  |||||||||||| ||||||||| |||| ||||||||||||||  ||||||| |||  ||||||||   || ||||||||||||||     
T  2417749 agttactcaactgaagaataatctacctcatattgtagatgtctaaaacaccaatccaacatgtgagaatctgttccatacggaggagctggaagcgtac 2417848  T
Q  187 tgcatttttgcaattttttatcatctcctgaatacaca 224  Q
    | ||||||||||||||||||||||| ||||||||||||    
T  2417849 tacatttttgcaattttttatcatcccctgaatacaca 2417886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 77 - 226
Target Start/End: Complemental strand, 40027337 - 40027189
Alignment:
Q  77 tgtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagct 176  Q
    ||||||||| |||||||||||||| |||||||||||||| ||| || || || | |||||||| |||||  |||||   |||  |||||||||| |||||    
T  40027337 tgtacaatatgcaagttactcaacaagagaataatctacctca-atcgtagaggtctaaaacatcaatccaacatgctagaaaatgttccatgaggagct 40027239  T
Q  177 ggaagcgtaatgcatttttgcaattttttatcatctcctgaatacacact 226  Q
    ||||||||||| |||||||| ||||||||| |||| ||||||||||||||    
T  40027238 ggaagcgtaatacatttttgtaattttttaccatcccctgaatacacact 40027189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 69 - 226
Target Start/End: Complemental strand, 49287567 - 49287413
Alignment:
Q  69 taacacgttgtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccat 168  Q
    ||||||| |||| ||||  ||||| |||||||||| ||||||||||| ||||||||| |||| ||||| ||||||||  |||||| ||||  || | |||    
T  49287567 taacacggtgtataatatccaagtcactcaactagggaataatctacctcatattgtagatgtctaaatcaccaatcaaacatgtaggaatgtgctgcat 49287468  T
Q  169 gaagagctggaagcgtaatgcatttttgcaattttttatcatctcctgaatacacact 226  Q
       ||||||||||| |||||||||||| ||||||||||||||| ||  ||||||||||    
T  49287467 ---gagctggaagcataatgcattttttcaattttttatcatccccgaaatacacact 49287413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 80 - 284
Target Start/End: Complemental strand, 33860750 - 33860546
Alignment:
Q  80 acaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctgga 179  Q
    |||||| ||| | |||||||||||||||||||||| |||||   || ||   |||| |||||||||  ||||| | ||||||||||||| || || || |    
T  33860750 acaatatgcaggctactcaactagagaataatctatttcattccgtagacatctaatacaccaatcaaacatgagagaacttgttccatcaacagttgaa 33860651  T
Q  180 agcgtaatgcatttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttctctcatatcccc 279  Q
    | |||||| ||||||||||| ||||||||||||| |||||||||||| |||   | | | ||   |  ||||| |||||||||||| |||||||||||||    
T  33860650 accgtaatacatttttgcaactttttatcatctcatgaatacacactacatcttgtaaaaaattgattgatgatatacacagagttgctctcatatcccc 33860551  T
Q  280 acagg 284  Q
    |||||    
T  33860550 acagg 33860546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 80 - 284
Target Start/End: Original strand, 33920173 - 33920377
Alignment:
Q  80 acaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctgga 179  Q
    |||||| ||| | |||||||||||||||||||||| |||||   || ||   |||| |||||||||  ||||| | ||||||||||||| || || || |    
T  33920173 acaatatgcaggctactcaactagagaataatctatttcattccgtagacatctaatacaccaatcaaacatgagagaacttgttccatcaacagttgaa 33920272  T
Q  180 agcgtaatgcatttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttctctcatatcccc 279  Q
    | |||||| ||||||||||| ||||||||||||| |||||||||||| |||   | | | ||   |  ||||| |||||||||||| |||||||||||||    
T  33920273 accgtaatacatttttgcaactttttatcatctcatgaatacacactacatcttgtaaaaaattgattgatgatatacacagagttgctctcatatcccc 33920372  T
Q  280 acagg 284  Q
    |||||    
T  33920373 acagg 33920377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 224
Target Start/End: Complemental strand, 37847359 - 37847219
Alignment:
Q  89 aagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctggaagcgtaatg 188  Q
    |||||||||||||||| ||||||||||||||||| ||  ||| ||||| ||||||||  || ||||| | ||||||||||| | | || |||||||||||    
T  37847359 aagttactcaactagaaaataatctacttcatatcgtacatgtctaaatcaccaatcaaacttgtggaatcttgttccatggaaacctagaagcgtaatg 37847260  T
Q  189 cattttt-----gcaattttttatcatctcctgaatacaca 224  Q
    |||||||      |||||| |||||||||||||||||||||    
T  37847259 catttttttttctcaatttgttatcatctcctgaatacaca 37847219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 80 - 280
Target Start/End: Complemental strand, 45196954 - 45196748
Alignment:
Q  80 acaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctg-- 177  Q
    |||||| |||||||||| |||||||||||||||||  |||||||||||||| ||||||||||||||| ||||     |  ||||| ||| | ||||||      
T  45196954 acaatatgcaagttacttaactagagaataatctatctcatattgttgatgtctaaaacaccaatcgaacatcaaacacattgttgcatcaggagctgga 45196855  T
Q  178 ----gaagcgtaatgcatttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttctctcat 273  Q
        |||| ||||||| ||||||||||||||||||||  ||||||||| |||| ||||  | |||||||| |  |||| |||||| ||| || | |||||    
T  45196854 actagaagtgtaatgcttttttgcaattttttatcattccctgaatacgcactacatattgtagataaaagattgatgtcatacatagaattgcactcat 45196755  T
Q  274 atcccca 280  Q
    |||||||    
T  45196754 atcccca 45196748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 71 - 287
Target Start/End: Original strand, 49440278 - 49440494
Alignment:
Q  71 acacgttgtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatga 170  Q
    |||| |||| ||||| |||||||||| ||| ||||||||||||||||||| | || |||| ||||||||||||||| |||||  | | | |||  |||||    
T  49440278 acacattgtgcaatatgcaagttactaaaccagagaataatctacttcatgtcgtagatgtctaaaacaccaatcgaacatggagaagcctgtatcatga 49440377  T
Q  171 agagctggaagcgtaatgcatttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttctct 270  Q
     ||  ||||||||| ||| | |||||  |||||||||| || | ||||||||   | |||   | |||||||| || ||||||||| ||||| || ||||    
T  49440378 ggatttggaagcgtgatgtacttttgtgattttttatcgtcccatgaatacatgatacatgttgtagataaaacactgatgacataaacagaattactct 49440477  T
Q  271 catatccccacaggttc 287  Q
    |||||||||||| ||||    
T  49440478 catatccccacatgttc 49440494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 64 - 146
Target Start/End: Complemental strand, 41186210 - 41186128
Alignment:
Q  64 aaaaataacacgttgtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcg 146  Q
    |||| ||||||  ||||||||| |||||||||||||||||| |||||||||  ||||||||| |||||||||| |||||||||    
T  41186210 aaaagtaacacaatgtacaatatgcaagttactcaactagaaaataatctatctcatattgtagatgcctaaaccaccaatcg 41186128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 155 - 280
Target Start/End: Original strand, 49540497 - 49540622
Alignment:
Q  155 ggaacttgttccatgaagagctggaagcgtaatgcatttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgaca 254  Q
    |||||||||| ||||| |||||||||   ||||| ||||||| || ||||||||||| |||||||||||||| ||||  | ||||  || || |||||||    
T  49540497 ggaacttgtttcatgaggagctggaattttaatgtatttttgaaactttttatcatcacctgaatacacactacatattgtagatccaagacggatgaca 49540596  T
Q  255 tacacagagtttctctcatatcccca 280  Q
    |||| |||||| ||||| ||||||||    
T  49540597 tacatagagttgctctcgtatcccca 49540622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 170
Target Start/End: Original strand, 49540418 - 49540491
Alignment:
Q  97 caactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatga 170  Q
    ||||||||||||||||||| |||||| || |||  |||||||| |||||  |||||  ||||||||||||||||    
T  49540418 caactagagaataatctacctcatatcgtagatttctaaaacaacaatccaacatgaaggaacttgttccatga 49540491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 281
Target Start/End: Complemental strand, 40027164 - 40027131
Alignment:
Q  248 gatgacatacacagagtttctctcatatccccac 281  Q
    |||||||||||||||||| |||||||||||||||    
T  40027164 gatgacatacacagagttactctcatatccccac 40027131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 224
Target Start/End: Complemental strand, 37850138 - 37850074
Alignment:
Q  160 ttgttccatgaagagctggaagcgtaatgcatttttgcaattttttatcatctcctgaatacaca 224  Q
    |||||||||| | || ||||| |||||||||||||| |||||| |||||||  ||||||| ||||    
T  37850138 ttgttccatggaaagttggaaacgtaatgcatttttacaatttgttatcattccctgaatgcaca 37850074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 78 - 281
Target Start/End: Complemental strand, 14964485 - 14964282
Alignment:
Q  78 gtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctg 177  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||   |||   | | |||||| |||   ||||||    
T  14964485 gtacaatatgcaaattactcaactagagaataatctacttcatattgtagatgtctaaaacaccaatctaccatcaagcaccttgttgcatctggagctg 14964386  T
Q  178 gaagcgtaatgcatttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttctctcatatcc 277  Q
    |||||||||||||||||||||||| ||||||||| || ||||||||||| ||||  | |||||||| || |||||||||||||||||| || ||||||||    
T  14964385 gaagcgtaatgcatttttgcaattgtttatcatccccagaatacacactacatattgtagataaaagactgatgacatacacagagttgctttcatatcc 14964286  T
Q  278 ccac 281  Q
    ||||    
T  14964285 ccac 14964282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 145
Target Start/End: Original strand, 540434 - 540500
Alignment:
Q  79 tacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatc 145  Q
    |||||||| || |||||||| ||||||||||||| || ||||||||||||||  |||| ||||||||    
T  540434 tacaataaccatgttactcatctagagaataatccacctcatattgttgatgtttaaagcaccaatc 540500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 145
Target Start/End: Original strand, 485609 - 485677
Alignment:
Q  77 tgtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatc 145  Q
    |||||||||| || |||||||| || ||||| |||| || |||||||||||||| ||||| ||||||||    
T  485609 tgtacaataaccatgttactcatctggagaaaaatccacctcatattgttgatgtctaaagcaccaatc 485677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 89 - 230
Target Start/End: Original strand, 32347364 - 32347505
Alignment:
Q  89 aagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctggaagcgtaatg 188  Q
    |||||| |||||||||||||||||||||||| ||||| |||| ||||||||||||||| || || |||| ||| |||||| | ||||||||||| |||||    
T  32347364 aagttattcaactagagaataatctacttcagattgtagatgtctaaaacaccaatcgaacttgagggatctttttccataaggagctggaagcataatg 32347463  T
Q  189 catttttgcaattttttatcatctcctgaatacacactgcat 230  Q
    |||||||||||| |||||||||| |||||||| |||| ||||    
T  32347464 catttttgcaatcttttatcatcccctgaatagacacggcat 32347505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 230
Target Start/End: Complemental strand, 31266969 - 31266823
Alignment:
Q  87 gcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctggaagcgtaa 186  Q
    |||| |||||||||||||||||||||||||||| || || |||  |||||| || | ||| || |   ||||||||||| || | ||| |||||| ||||    
T  31266969 gcaaattactcaactagagaataatctacttcagatcgtagatttctaaaatactagtcgaacttaaaggaacttgttctattaggagttggaagtgtaa 31266870  T
Q  187 tgcatttttgcaatt---ttttatcatctcctgaatacacactgcat 230  Q
    |||||||||||||||   |||||||||| |||||||| ||| |||||    
T  31266869 tgcatttttgcaattttattttatcatcccctgaatagacattgcat 31266823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 1204363 - 1204404
Alignment:
Q  105 gaataatctacttcatattgttgatgcctaaaacaccaatcg 146  Q
    ||||||||||| ||||| |||||||| |||||||||||||||    
T  1204363 gaataatctacctcatagtgttgatgtctaaaacaccaatcg 1204404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 145
Target Start/End: Complemental strand, 34606114 - 34606051
Alignment:
Q  82 aataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatc 145  Q
    |||||||| | |||||||| |||| ||||||||| ||||||||| |||| ||||||||||||||    
T  34606114 aataagcatgctactcaacgagagtataatctacctcatattgtagatgtctaaaacaccaatc 34606051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 145
Target Start/End: Complemental strand, 34727391 - 34727328
Alignment:
Q  82 aataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatc 145  Q
    |||||||| | |||||||| |||| ||||||||| ||||||||| |||| ||||||||||||||    
T  34727391 aataagcatgctactcaacgagagtataatctacctcatattgtagatgtctaaaacaccaatc 34727328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 145
Target Start/End: Original strand, 33465645 - 33465708
Alignment:
Q  82 aataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatc 145  Q
    |||||||| | |||||||  |||| ||||||||| ||||||||| |||| ||||||||||||||    
T  33465645 aataagcatgctactcaaaaagagtataatctacctcatattgtagatgtctaaaacaccaatc 33465708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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