View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9785_low_1 (Length: 414)
Name: NF9785_low_1
Description: NF9785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9785_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 21 - 301
Target Start/End: Original strand, 6958693 - 6958976
Alignment:
| Q |
21 |
gttcgtgtagatattatcattttaaagattgaaattttatgctgaaaactaattgaaatcaaagtctacaaatttatgagcagtagctagcatattcttt |
120 |
Q |
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| T |
6958693 |
gttcgtgtagatattatcattttaaagattgaaattttatgctgaaaactaattgaaatcaaagtctacaaatttatgagcagtagctagcatattcttt |
6958792 |
T |
|
| Q |
121 |
gaattcaatatatt---aaccctatctttattaataggaaagcacaaagaggttccagaagaacattacacataatagaacctcggtcgatgcttctaca |
217 |
Q |
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|||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6958793 |
gaattcaatatatttagaaccctatctttattaatagtaaagcacaaagaggtttcagaaggacattacacataatagaacctcggtcgatgcttctaca |
6958892 |
T |
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| Q |
218 |
tgactattggaattgaaagttatataaaacaaaacttcatttcgtatctttactttacgacatttactgaattgaggactgact |
301 |
Q |
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| T |
6958893 |
tgactattggaattgaaagttatataaaacaaaacttcatttcatatctttactttacgacatttactaaattgaggactgact |
6958976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 40 - 301
Target Start/End: Complemental strand, 30575384 - 30575120
Alignment:
| Q |
40 |
ttttaaagattgaaattttatgctgaaaactaattgaaatcaaagtctacaaatttatgagcagtagctagcatattctttgaattcaatatattaa--- |
136 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
30575384 |
ttttaaagattgaagttttatgctgaaaactaattgaaatcaaagtcttcaaattcatgagcagtagctagcatattctttgaattcaatatattcagga |
30575285 |
T |
|
| Q |
137 |
ccctatctttattaataggaaagcacaaagaggttccagaagaacattacacataatagaacctcggtcgatgcttctacatgactattggaattgaaag |
236 |
Q |
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| T |
30575284 |
ccctatctttattaacaggaaaacacagagagattcctgaaggacattacacacaacagaaccacagtcgatgcttctacacggttattggaattgaaag |
30575185 |
T |
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| Q |
237 |
ttatataaaacaaaacttcatttcgtatctttactttacgacatttactgaattgaggactgact |
301 |
Q |
| |
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|||||||||||||| |||||||| || || |||||||||||| || |||||||||| |||||||| |
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| T |
30575184 |
ttatataaaacaaagcttcattttgtgtcattactttacgacgttcactgaattgaagactgact |
30575120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 40 - 301
Target Start/End: Complemental strand, 23007116 - 23006852
Alignment:
| Q |
40 |
ttttaaagattgaaattttatgctgaaaactaattgaaatcaaagtctacaaatttatgagcagtagctagcatattctttgaattcaatatattaa--- |
136 |
Q |
| |
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|||||||||||||| |||||||| |||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||| | |
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| T |
23007116 |
ttttaaagattgaagttttatgccgaaaactaattgaaatcaaagtcttcaaattcatgagcagtagcaagcatattctttgaattcaatatattcagga |
23007017 |
T |
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| Q |
137 |
ccctatctttattaataggaaagcacaaagaggttccagaagaacattacacataatagaacctcggtcgatgcttctacatgactattggaattgaaag |
236 |
Q |
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||||||||||||||| |||||| |||| ||||||||| |||| |||||||||| || |||||| | |||||||||||||| | ||||||||||||||| |
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| T |
23007016 |
ccctatctttattaacaggaaaacacagagaggttcctgaaggacattacacacaacagaaccacactcgatgcttctacacggttattggaattgaaag |
23006917 |
T |
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| Q |
237 |
ttatataaaacaaaacttcatttcgtatctttactttacgacatttactgaattgaggactgact |
301 |
Q |
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|||||||||||||| |||||||| || || |||||||||||| || |||||||||| |||||||| |
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| T |
23006916 |
ttatataaaacaaagcttcattttgtgtcattactttacgacgttcactgaattgaagactgact |
23006852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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