View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9785_low_2 (Length: 325)
Name: NF9785_low_2
Description: NF9785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9785_low_2 |
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| [»] scaffold0444 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 11 - 310
Target Start/End: Complemental strand, 30183252 - 30182953
Alignment:
| Q |
11 |
caaaggcggtaaggtcatgaaccatatctatctattttcactttcattacagttaattgaaattttgagtgtttattttgcaaaattgaatttcaatcat |
110 |
Q |
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| T |
30183252 |
caaaggcggtaaggtcatgaaccctatctatctattttcactttcattacagtaaattgaaattttgagtgtttattttgcaaaattgaatttcaatcat |
30183153 |
T |
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| Q |
111 |
gcaattaggttttattccatttttgctttgttgttttggtttacagaataaaaaagaaagaaagaaggttagggatgtggggattttgaagaaagatcct |
210 |
Q |
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| T |
30183152 |
gcaattaggttttattccatttttgctttgttgttttggtttacagaattaaaaagaaagaaagaaggtgagggatgtggggattttgaagaaagatcct |
30183053 |
T |
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| Q |
211 |
gaccaactcaagaaacagattgaaaacttggaaatgatgagtaagttgcgtcatgctttattttattaactagcttttgcatttcaaggaactggaattt |
310 |
Q |
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| T |
30183052 |
gatcaactcaagaaacagattgaaaacttggaaatgatgagcaagtctcatcatgctttattttattaactagcttttgcatttcaaggaactggaattt |
30182953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 120 - 315
Target Start/End: Complemental strand, 44431074 - 44430879
Alignment:
| Q |
120 |
ttttattccatttttgctttgttgttttggtttacagaataaaaaagaaagaaagaaggttagggatgtggggattttgaagaaagatcctgaccaactc |
219 |
Q |
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| T |
44431074 |
ttttattccatttttgctttgttgttttggtttacagaataaaaaagaaagaaagaaggtgagggatgtggggattttgaagaaagatcctgatcaactc |
44430975 |
T |
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| Q |
220 |
aagaaacagattgaaaacttggaaatgatgagtaagttgcgtcatgctttattttattaactagcttttgcatttcaaggaactggaatttcaccc |
315 |
Q |
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| T |
44430974 |
aagaaacagattgaaaacttggaaatgatgagtaagtcgcgtcatgctttattttattaactagcttttgcatttcaaggaactggaatttcaccc |
44430879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 145 - 315
Target Start/End: Complemental strand, 44441471 - 44441300
Alignment:
| Q |
145 |
tttggtttacagaataaaaaagaaagaaagaaggttagggatgtggggattttgaagaaagatcctgaccaactcaagaaacagattgaaaacttggaaa |
244 |
Q |
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| T |
44441471 |
tttggtttacagaataaaaaagaaagaaagaaggtgagggatgtggggattttgaagaaagatcctgatcaactcaagaagcagattgagaacttggaaa |
44441372 |
T |
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| Q |
245 |
tgatgagtaagttgcgtcatgctttattttattaactagcttttgcatttc-aaggaactggaatttcaccc |
315 |
Q |
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| T |
44441371 |
tgatgagtaagtcgagcggtgcttcattttattaactagctcttgcattccaaaggaactggaatttcaccc |
44441300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 35 - 123
Target Start/End: Complemental strand, 44431201 - 44431114
Alignment:
| Q |
35 |
tatctatctattttcactttcattacagttaattgaaattttgagtgtttattttgcaaaattgaatttcaatcatgcaattaggtttt |
123 |
Q |
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| T |
44431201 |
tatctatctattttcactttcattgcaat-aattgaaattttgagtgtttattttgcaaaattgaatttcaatcatgcaattaggtttt |
44431114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 35 - 119
Target Start/End: Complemental strand, 44441649 - 44441566
Alignment:
| Q |
35 |
tatctatctattttcactttcattacagttaattgaaattttgagtgtttattttgcaaaattgaatttcaatcatgcaattagg |
119 |
Q |
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| T |
44441649 |
tatctatctattttcactttcattgcaat-aattgaaattttgagtgtttattttgcaaaattgaatttcaattatgcaaatagg |
44441566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0444 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: scaffold0444
Description:
Target: scaffold0444; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 145 - 315
Target Start/End: Complemental strand, 6284 - 6113
Alignment:
| Q |
145 |
tttggtttacagaataaaaaagaaagaaagaaggttagggatgtggggattttgaagaaagatcctgaccaactcaagaaacagattgaaaacttggaaa |
244 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||| |
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| T |
6284 |
tttggtttacagaataaaaaagaaagaaagaaggtgagggatgtggggattttgaagaaagatcctgatcaactcaagaagcagattgagaacttggaaa |
6185 |
T |
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| Q |
245 |
tgatgagtaagttgcgtcatgctttattttattaactagcttttgcatttc-aaggaactggaatttcaccc |
315 |
Q |
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| T |
6184 |
tgatgagtaagtcgagcggtgcttcattttattaactagctcttgcattccaaaggaactggaatttcaccc |
6113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0444; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 35 - 119
Target Start/End: Complemental strand, 6462 - 6379
Alignment:
| Q |
35 |
tatctatctattttcactttcattacagttaattgaaattttgagtgtttattttgcaaaattgaatttcaatcatgcaattagg |
119 |
Q |
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| T |
6462 |
tatctatctattttcactttcattgcaat-aattgaaattttgagtgtttattttgcaaaattgaatttcaattatgcaaatagg |
6379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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