View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9786_high_12 (Length: 267)
Name: NF9786_high_12
Description: NF9786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9786_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 61 - 231
Target Start/End: Complemental strand, 107005 - 106835
Alignment:
| Q |
61 |
agtgtttgtgttataaagatcaaaagagaagagaatgaattacttgggtcgcgagcggtggctttaacagtgtaaccacgatggagaaggtaacgaacga |
160 |
Q |
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| T |
107005 |
agtgtttgtgttataaagatcaaaagagaagagaatgaattacttgggtcgcgaacggtggctttaacagtgtaaccacgatggagaaggtaacgaacga |
106906 |
T |
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| Q |
161 |
gccatgaagctatgtaacctgaagctccagttacacacacaacgttgctgttcatgtctgatcagttatta |
231 |
Q |
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| T |
106905 |
gccatgaagctatgtaacctgaagctccagttacacacacaacgttgctgttcatgtctgatcagttatta |
106835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 101 - 203
Target Start/End: Complemental strand, 87595 - 87493
Alignment:
| Q |
101 |
tacttgggtcgcgagcggtggctttaacagtgtaaccacgatggagaaggtaacgaacgagccatgaagctatgtaacctgaagctccagttacacacac |
200 |
Q |
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| T |
87595 |
tacttggatcgcgaacggtggctttaacagtgtagccacgatgaagaagcaatcggacgagccatgaagcgatgtaacctgaagcgccagtcacacacac |
87496 |
T |
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| Q |
201 |
aac |
203 |
Q |
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||| |
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| T |
87495 |
aac |
87493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 107113 - 107051
Alignment:
| Q |
3 |
tatgaagcacggacgtagacgcagacacattaactttaaacaatgacttaattaattcagtgt |
65 |
Q |
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||||||||||| || ||||| || ||||||||||||||||||||||||||||||||| ||||| |
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| T |
107113 |
tatgaagcacgaacatagacacatacacattaactttaaacaatgacttaattaattaagtgt |
107051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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