View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9786_high_4 (Length: 395)
Name: NF9786_high_4
Description: NF9786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9786_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 11 - 379
Target Start/End: Complemental strand, 47641561 - 47641194
Alignment:
| Q |
11 |
cagagaaaaacaataaaaactatcttttatcgagggtatacttcagtaatggatacttcattcacagaccatggaattgaacatgtggtagactgatcag |
110 |
Q |
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| T |
47641561 |
cagagaaaaaca-taaaaactatcttttatcgagggtatacttcagtaatggatacttcattcacagaccatggaattgaacatgtggtagactgatcag |
47641463 |
T |
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| Q |
111 |
aatcaagcccttgctttattctgtcaggtgttcttccacgcattaaagatggtggttgtcgaggtaatgacaaggtaactgaataactgttgagcataag |
210 |
Q |
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| T |
47641462 |
aatcaagcccttgctttattctgtcaggtgttcttccacgcattaaagacggtggttgtcgaggtaatgacaaggtaactgaataactgttgagcataag |
47641363 |
T |
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| Q |
211 |
tgcaatagtttccatggatggcctgtcatatggactttcctgaacacacaataaaccaatatggatgcatctcataacttcatttcttgaataagagtct |
310 |
Q |
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| T |
47641362 |
tgcaatagtttccatggatggcctgtcatatggactttcctgaacacacaataaaccaatatggatgcatctcataacttcatttcttgaataagagtct |
47641263 |
T |
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| Q |
311 |
ctaagtgttggatccagtaactccagaggtgtttgctctgaccattttttccaagcctatggtaaatac |
379 |
Q |
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| T |
47641262 |
ctaagtgttggatccagtaactccagaggtgtttgctctgaccattttttccaagcctatggtaaatac |
47641194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 295
Target Start/End: Complemental strand, 47771647 - 47771543
Alignment:
| Q |
191 |
gaataactgttgagcataagtgcaatagtttccatggatggcctgtcatatggactttcctgaacacacaataaaccaatatggatgcatctcataactt |
290 |
Q |
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| T |
47771647 |
gaataactattaagcatgagtgcaacagtagccatggttggtctgtcaactacattttcttgaacacaaagtaagccaatatggatgcatctcattattt |
47771548 |
T |
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| Q |
291 |
cattt |
295 |
Q |
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| T |
47771547 |
cattt |
47771543 |
T |
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