View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9786_high_5 (Length: 394)
Name: NF9786_high_5
Description: NF9786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9786_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 19 - 384
Target Start/End: Original strand, 3800854 - 3801221
Alignment:
| Q |
19 |
gatcaatttcttaataaatcgtatatttgtgatgtgtggaagactggacttgaattagagaaagatgatgatggttatatatcaaggaaagagataaaga |
118 |
Q |
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| T |
3800854 |
gatcaatttctcaataaatcgtatatttgtgatgtgtggaagactggacttgaattagagaaagatgatgatggttatatatcaaggaaagagataaaga |
3800953 |
T |
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| Q |
119 |
agaaggtggatcaagtagttggtgatgatgacataaaggcaatgcgtttgaaaatgaagaaaatgactattaataatatagaagaaggtggccagtcatc |
218 |
Q |
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| T |
3800954 |
agaaggtgtatcaagtagttggtgatgatgacataaaggcaatgtgtttgaaaatgaagaaaatgactattactaatatagaagaaggtggccagtcatc |
3801053 |
T |
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| Q |
219 |
acataatctccaaaagtttattacttgggcgaattattaatgtatttataatctattacttgttgttttgaattagtgctgttctcttttt--tctttgt |
316 |
Q |
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| T |
3801054 |
acataatctccaaaagtttattacttgggcgaattattaatgtgtttataatctattacttgttgttttgaattagtgttgttctcttttttctctttct |
3801153 |
T |
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| Q |
317 |
atatatgttcatggacacttctcggattagatgtgttctggtcttggacacacgacaccacacctatg |
384 |
Q |
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| T |
3801154 |
atatatgttcacagatacttctcgaattagatgtgttctggtctcggacacacgacaccacacttatg |
3801221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 3789253 - 3788968
Alignment:
| Q |
19 |
gatcaatttcttaataaatcgtatatttgtgatgtgtggaagactggacttgaattagagaaagatgatgatggttatatatcaaggaaagagataaaga |
118 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||| |
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| T |
3789253 |
gatcaatttctcaataaatcgtatatttgtgatgtgtggaagactggacttgaattagagaaagatgatgatggatttatatcaaggcaagagataaaga |
3789154 |
T |
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| Q |
119 |
agaaggtggatcaagtagttggtgatgatgacataaaggcaatgcgtttgaaaatgaagaaaatgactattaataatatagaagaaggtggccagtcatc |
218 |
Q |
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| T |
3789153 |
agaaggtggatcaagtagttggtgatgatgacataaaggaaatgtgtttgaaaatgaagaaaatgactattactaatatagaagaaggtggccagtcatc |
3789054 |
T |
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| Q |
219 |
acataatctccaaaagtttattacttgggcgaattattaatgtatttataatctatta---cttgttgttttgaattagtgctgtt |
301 |
Q |
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| T |
3789053 |
acataatcttcaaaagtttattagttgggcgaattattaatgtttttataatctattatttcttgttgttttgaattagtggtgtt |
3788968 |
T |
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