View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9786_high_6 (Length: 393)
Name: NF9786_high_6
Description: NF9786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9786_high_6 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 107500 - 107108
Alignment:
| Q |
1 |
tcagcatcagtaaaccaagtttcatcaacaacaacatcaggagttcgaggcttttcattgtacgcaacagcagcagcagacgaggttaagacaacacgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
107500 |
tcagcatcagtaaaccaagtttcatcaacaacaacatcaggagttcgaggcttttcattgtacgcaacagcagcagcagaagaggttaagacaacacgtt |
107401 |
T |
|
| Q |
101 |
tgagtaatggcgatttggcacatgatttgagaacattgagagtcccgttgagtgcaggatcaatcaactcagcctgagggtctttgacatcatgatagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
107400 |
tgagtaatggcgatttggcacatgatttgagaacattgagagtcccgttgagtgcaggatcaatcaactcagcctgagggtctttgacatgatgatagaa |
107301 |
T |
|
| Q |
201 |
gggagatgcagtgtgaaacacaccatgacagccttgaacaacagaatcaaaagctccctgttcaagtagatttgccttaaacagttgtaatctctcctta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
107300 |
gggagatgcagtgtgaaacacaccatgacagccttgaacagcagaatcaaaagctccctgttcaagtagatttgccttaaacagttgtaatctctcctta |
107201 |
T |
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| Q |
301 |
gcaccttcaagcttaaccaagtggttgatcttcttcagatcccctacaggcagccataatactcaaatcaaacatagggtcaaaacttatgaa |
393 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
107200 |
gcaccttcaagcttaaccaagtggttgatcttcttcggatcacctacaggcagccataataatcaaatcaaacatagggtcaaaacgtatgaa |
107108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 88136 - 87812
Alignment:
| Q |
1 |
tcagcatcagtaaaccaagtttcatcaacaacaacatcaggagttcgaggcttttcattgtacgcaacagcagcagcagacgaggttaagacaacacgtt |
100 |
Q |
| |
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|||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||| || |||||||||||| ||| || ||||| |||||||||| |
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| T |
88136 |
tcagcatctgtaaaccaagtctcatcaacaacaacatcaggagttcgaggcttcccattataagcaacagcagcaatagaagaagttaaaacaacacgtt |
88037 |
T |
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| Q |
101 |
tgagtaatggcgatttggcacatgatttgagaacattgagagtcccgttgagtgcaggatcaatcaactcagcctgagggtctttgacatcatgatagaa |
200 |
Q |
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||||| |||| ||||| |||||||| |||||||||||||||||||| ||||| |||||||||||||| ||||||||||| || |||||||||||||| || |
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| T |
88036 |
tgagtgatggggatttagcacatgagttgagaacattgagagtccctttgagagcaggatcaatcaattcagcctgaggatccttgacatcatgataaaa |
87937 |
T |
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| Q |
201 |
gggagatgcagtgtgaaacacaccatgacagccttgaacaacagaatcaaaagctccctgttcaagtagatttgccttaaacagttgtaatctctcctta |
300 |
Q |
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| T |
87936 |
gggagatgcagtgtgaaagacaccatgacagccttgaacaacagaatcaaaggcaccttcttcaagtagatttgccttgaacagttgcaatctctcctta |
87837 |
T |
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| Q |
301 |
gcaccttcaagcttaaccaagtggt |
325 |
Q |
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| T |
87836 |
gcaccatcaagcttaaccaagtggt |
87812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 6 - 146
Target Start/End: Complemental strand, 2707190 - 2707050
Alignment:
| Q |
6 |
atcagtaaaccaagtttcatcaacaacaacatcaggagttcgaggcttttcattgtacgcaacagcagcagcagacgaggttaagacaacacgtttgagt |
105 |
Q |
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||||||||||||||||||||| ||||| ||||| ||||| ||||||||| |||||||||||| ||||| ||| |||||||| ||||||||||| || |
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| T |
2707190 |
atcagtaaaccaagtttcatcgacaactacatcgagagtttgaggctttttattgtacgcaaccgcagcgatagaagaggttaatacaacacgtttcaga |
2707091 |
T |
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| Q |
106 |
aatggcgatttggcacatgatttgagaacattgagagtccc |
146 |
Q |
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| T |
2707090 |
gatggaaattttgcacatgatttcagcacatttagagtccc |
2707050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 116; Significance: 7e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 44784726 - 44784893
Alignment:
| Q |
1 |
tcagcatcagtaaaccaagtttcatcaacaacaacatcaggagttcgaggcttttcattgtacgcaacagcagcagcagacgaggttaagacaacacgtt |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||| || |||||||||||||||| |
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| T |
44784726 |
tcagcatcagtaaaccaagtctcatcaacaacaacatcaggagttcgaggctttccattgtatgcaacagcagcgacagaagatgttaagacaacacgtt |
44784825 |
T |
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| Q |
101 |
tgagtaatggcgatttggcacatgatttgagaacattgagagtcccgttgagtgcaggatcaatcaac |
168 |
Q |
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| T |
44784826 |
tgagtgatggggattttgcacatgagttgagaacattgagagtccctttgagcgcaggatcaatcaac |
44784893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 208 - 323
Target Start/End: Complemental strand, 29549082 - 29548967
Alignment:
| Q |
208 |
gcagtgtgaaacacaccatgacagccttgaacaacagaatcaaaagctccctgttcaagtagatttgccttaaacagttgtaatctctccttagcacctt |
307 |
Q |
| |
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||||| ||||| |||||||| || ||||||| |||||||||||| | || | |||||||| || ||||||||| ||||| || || ||||| ||||| | |
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| T |
29549082 |
gcagtatgaaagacaccatggcatccttgaataacagaatcaaaggaaccttcttcaagtaaatctgccttaaagagttgcaacctttcctttgcaccat |
29548983 |
T |
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| Q |
308 |
caagcttaaccaagtg |
323 |
Q |
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|||| |||| |||||| |
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| T |
29548982 |
caagtttaagcaagtg |
29548967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 177
Target Start/End: Complemental strand, 25934307 - 25934237
Alignment:
| Q |
107 |
atggcgatttggcacatgatttgagaacattgagagtcccgttgagtgcaggatcaatcaactcagcctga |
177 |
Q |
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|||| ||||| |||||||||| |||||||| ||||| || || ||||| ||||||||||||||||||||| |
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| T |
25934307 |
atggtgattttgcacatgattgaagaacattaagagttcccttcagtgccggatcaatcaactcagcctga |
25934237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 208 - 323
Target Start/End: Complemental strand, 25933555 - 25933440
Alignment:
| Q |
208 |
gcagtgtgaaacacaccatgacagccttgaacaacagaatcaaaagctccctgttcaagtagatttgccttaaacagttgtaatctctccttagcacctt |
307 |
Q |
| |
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||||| ||||| ||||||| ||| || | ||||||||| ||||||| || | ||| | |||| ||||||||| ||||| || |||||||| ||||| | |
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| T |
25933555 |
gcagtatgaaagacaccatcacaaccctcaacaacagagtcaaaagaaccttcttccaagagatctgccttaaagagttgcaacctctcctttgcaccat |
25933456 |
T |
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| Q |
308 |
caagcttaaccaagtg |
323 |
Q |
| |
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|||| ||||||||||| |
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| T |
25933455 |
caagtttaaccaagtg |
25933440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 26101933 - 26101881
Alignment:
| Q |
118 |
gcacatgatttgagaacattgagagtcccgttgagtgcaggatcaatcaactc |
170 |
Q |
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||||||||||| |||||||| ||||| || || ||||| |||||||||||||| |
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| T |
26101933 |
gcacatgatttaagaacattaagagttcccttaagtgccggatcaatcaactc |
26101881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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