View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9786_low_11 (Length: 365)
Name: NF9786_low_11
Description: NF9786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9786_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 11 - 330
Target Start/End: Complemental strand, 7704571 - 7704252
Alignment:
| Q |
11 |
catagggaaaactggcgtagtcaaaccaataagctaacatcacagatttgctcagagacaaagatactttacaagttggcagcatgtttaggccatgtcc |
110 |
Q |
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| T |
7704571 |
catagggaaaactggcgtagtcaaaccaataagctaacatcacagatttgctcagagacaaagatactttacaagttggcagcatgtttaggccatgacc |
7704472 |
T |
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| Q |
111 |
aaatgttgttcttacagaaccaaatagaaggatgaactgaaactaatgaaaattatattaatagcaaaaaattgaaccgtaaatgaattaatgaacaatg |
210 |
Q |
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| T |
7704471 |
aaatgttgttcttacagaaccaaatagaaggatgaactgaaactaatgaaaattatattaatagcaaaaaattgaaccgtaaatgaattaatgaacaatg |
7704372 |
T |
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| Q |
211 |
gatggagatgaaatctccttgcaaaagaccaacaaaggaacaacttttcaaaagaacaatggaacatcttttcatccaatagttagctccactaattccc |
310 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7704371 |
gatggagatgaaatctccttgcaaaagacaaacaaaggaacaacttttcaaaagaacaatggaacatcttttcatccaatagttagctccactaattccc |
7704272 |
T |
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| Q |
311 |
atttcacactcatgatgtcc |
330 |
Q |
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||||||||||||| |||||| |
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| T |
7704271 |
atttcacactcatcatgtcc |
7704252 |
T |
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