View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9786_low_12 (Length: 364)
Name: NF9786_low_12
Description: NF9786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9786_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 35648170 - 35648523
Alignment:
| Q |
1 |
tcctgctctttattcgagagtggggttttgggttccattgtagcatcatttggagtgttttcttgatttgttgtgtcttcagtaatgacagtggttgtgt |
100 |
Q |
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| T |
35648170 |
tcctgctctttattcgagagtggggttttgggttccattgtagcatcatttggagtgttttcttgatttgttgtgtcttcagaagtgacagtggttgtgt |
35648269 |
T |
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| Q |
101 |
ttgtatttgtatttgtatcctctttggtttgaggagtcacttcttgaacaggaatgatcctcacatgctcttgttgaatagcattgcctacatctttatc |
200 |
Q |
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| T |
35648270 |
ttgtgtttgtatttgtatcctctttggtttgagaagtcacttcttgaacaggaatgatcctcacatgctcttgttgagtagcattgcctgcatctttatc |
35648369 |
T |
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| Q |
201 |
tatctcaacatctttgttgttacctcgtgttgatcttttgttgctgcttacaacagaaacttgcacactttcttgaacaactttccttgtggatctaacc |
300 |
Q |
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| T |
35648370 |
tatctcaacatctttgttgttacctcgtgttgatcttttgtggctgcttacaacagaaacttgcacactttcttgaacaactttccttgtggatctaacc |
35648469 |
T |
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| Q |
301 |
accactttcttagcactctttggagccattaactatccctttcactcacctttg |
354 |
Q |
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| T |
35648470 |
accactttcttagcactctttggagccattaactatccctttcactcacctttg |
35648523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 244 - 342
Target Start/End: Original strand, 175535 - 175633
Alignment:
| Q |
244 |
ctgcttacaacagaaacttgcacactttcttgaacaactttccttgtggatctaaccaccactttcttagcactctttggagccattaactatcccttt |
342 |
Q |
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| T |
175535 |
ctgcttaaaacataaacttgcacactttcttgaacaactttccttgttgatctaaccaccactttcttagcactctttggagccattcactgtcccttt |
175633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 47189954 - 47189914
Alignment:
| Q |
244 |
ctgcttacaacagaaacttgcacactttcttgaacaacttt |
284 |
Q |
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| T |
47189954 |
ctgcttaaaacataaacctgcacactttcttgaacaacttt |
47189914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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