View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9786_low_13 (Length: 306)

Name: NF9786_low_13
Description: NF9786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9786_low_13
NF9786_low_13
[»] chr8 (22 HSPs)
chr8 (18-184)||(16457861-16458027)
chr8 (184-272)||(24995390-24995478)
chr8 (184-265)||(31207364-31207445)
chr8 (184-272)||(9519497-9519585)
chr8 (184-272)||(34389000-34389088)
chr8 (184-272)||(16457456-16457543)
chr8 (184-272)||(32066290-32066378)
chr8 (194-272)||(37986853-37986931)
chr8 (184-267)||(36630835-36630918)
chr8 (193-272)||(41893396-41893474)
chr8 (197-267)||(15821379-15821449)
chr8 (197-267)||(30236128-30236198)
chr8 (201-264)||(17657005-17657068)
chr8 (209-272)||(20138449-20138512)
chr8 (197-267)||(15906697-15906767)
chr8 (184-272)||(12898269-12898357)
chr8 (210-267)||(32945703-32945760)
chr8 (217-264)||(38577793-38577840)
chr8 (209-255)||(10248565-10248611)
chr8 (197-230)||(33967337-33967370)
chr8 (197-246)||(40531243-40531292)
chr8 (197-241)||(544376-544420)
[»] chr1 (22 HSPs)
chr1 (184-272)||(31585755-31585843)
chr1 (194-272)||(46692814-46692892)
chr1 (184-272)||(41920450-41920538)
chr1 (184-272)||(5389416-5389504)
chr1 (184-272)||(30685899-30685987)
chr1 (184-267)||(24684478-24684561)
chr1 (184-272)||(5459159-5459247)
chr1 (186-265)||(24449932-24450011)
chr1 (197-267)||(24658940-24659010)
chr1 (197-267)||(46814467-46814537)
chr1 (184-265)||(20113523-20113604)
chr1 (197-265)||(19598647-19598715)
chr1 (193-255)||(17033593-17033655)
chr1 (197-261)||(27031846-27031910)
chr1 (197-264)||(7857664-7857731)
chr1 (200-267)||(32864561-32864628)
chr1 (209-267)||(27102214-27102272)
chr1 (197-247)||(27905423-27905473)
chr1 (197-246)||(38544759-38544808)
chr1 (197-255)||(15840924-15840982)
chr1 (197-246)||(6583237-6583286)
chr1 (197-246)||(9313310-9313359)
[»] chr7 (32 HSPs)
chr7 (184-272)||(38306259-38306347)
chr7 (184-274)||(47325878-47325968)
chr7 (184-264)||(10244180-10244260)
chr7 (184-267)||(3419656-3419739)
chr7 (184-266)||(33435107-33435189)
chr7 (184-272)||(5860283-5860371)
chr7 (184-272)||(37794987-37795075)
chr7 (184-267)||(3867114-3867197)
chr7 (184-263)||(41089752-41089831)
chr7 (197-267)||(6584920-6584990)
chr7 (197-267)||(34389973-34390043)
chr7 (201-253)||(3478367-3478419)
chr7 (196-255)||(13311849-13311908)
chr7 (209-272)||(44353559-44353622)
chr7 (197-255)||(6716748-6716806)
chr7 (197-267)||(35745827-35745897)
chr7 (197-255)||(1320805-1320863)
chr7 (197-250)||(46262136-46262189)
chr7 (199-267)||(8745166-8745234)
chr7 (201-264)||(12480901-12480965)
chr7 (197-232)||(9349760-9349795)
chr7 (184-267)||(25160813-25160896)
chr7 (197-232)||(38485567-38485602)
chr7 (197-264)||(48058657-48058724)
chr7 (197-255)||(16828948-16829006)
chr7 (209-255)||(16954676-16954722)
chr7 (198-232)||(17802851-17802885)
chr7 (201-255)||(24324810-24324864)
chr7 (211-255)||(2613879-2613923)
chr7 (196-244)||(9428128-9428176)
chr7 (197-241)||(27993562-27993606)
chr7 (197-241)||(35206719-35206763)
[»] chr4 (27 HSPs)
chr4 (184-272)||(4305723-4305811)
chr4 (184-267)||(8255025-8255108)
chr4 (184-267)||(8268443-8268526)
chr4 (184-265)||(30964439-30964520)
chr4 (197-267)||(25753183-25753253)
chr4 (185-265)||(30167566-30167646)
chr4 (197-267)||(31050662-31050732)
chr4 (194-267)||(41117967-41118040)
chr4 (197-265)||(53823423-53823491)
chr4 (194-261)||(38637238-38637305)
chr4 (197-255)||(21387216-21387274)
chr4 (197-255)||(22811172-22811230)
chr4 (197-267)||(38929838-38929908)
chr4 (197-257)||(36962626-36962685)
chr4 (196-267)||(46698784-46698856)
chr4 (197-241)||(53756767-53756811)
chr4 (197-256)||(39041285-39041344)
chr4 (197-232)||(40813816-40813851)
chr4 (209-255)||(2792286-2792332)
chr4 (197-255)||(6599957-6600015)
chr4 (197-267)||(28966878-28966948)
chr4 (214-264)||(35341341-35341391)
chr4 (209-267)||(35800512-35800570)
chr4 (194-232)||(39421048-39421086)
chr4 (185-246)||(2061759-2061820)
chr4 (197-230)||(37707392-37707425)
chr4 (201-241)||(26474851-26474891)
[»] chr2 (20 HSPs)
chr2 (184-272)||(39338860-39338948)
chr2 (197-267)||(7874302-7874372)
chr2 (197-267)||(14405209-14405279)
chr2 (183-272)||(10524094-10524187)
chr2 (184-263)||(387171-387250)
chr2 (197-265)||(1269494-1269562)
chr2 (197-267)||(4471934-4472004)
chr2 (197-265)||(22885135-22885203)
chr2 (197-264)||(13337285-13337352)
chr2 (197-267)||(10173578-10173648)
chr2 (197-267)||(16959993-16960063)
chr2 (197-267)||(15126410-15126480)
chr2 (198-267)||(2062901-2062970)
chr2 (197-232)||(4162055-4162090)
chr2 (209-267)||(7695986-7696044)
chr2 (209-251)||(9560804-9560846)
chr2 (197-246)||(33788653-33788702)
chr2 (197-245)||(14106546-14106594)
chr2 (211-255)||(15723197-15723241)
chr2 (194-230)||(41086825-41086861)
[»] chr3 (27 HSPs)
chr3 (194-272)||(17550965-17551043)
chr3 (184-267)||(19176500-19176583)
chr3 (184-267)||(9584053-9584136)
chr3 (184-263)||(43012373-43012452)
chr3 (184-272)||(2392501-2392589)
chr3 (191-267)||(20611788-20611864)
chr3 (184-265)||(2394255-2394336)
chr3 (184-272)||(34475749-34475837)
chr3 (184-272)||(45163851-45163941)
chr3 (209-263)||(23328354-23328408)
chr3 (197-267)||(40023572-40023642)
chr3 (197-267)||(45398807-45398877)
chr3 (197-267)||(47945717-47945787)
chr3 (203-267)||(1652886-1652950)
chr3 (196-255)||(5556580-5556639)
chr3 (197-267)||(33143948-33144019)
chr3 (197-255)||(19295877-19295935)
chr3 (197-246)||(14755286-14755335)
chr3 (197-241)||(20710734-20710778)
chr3 (197-232)||(14879446-14879481)
chr3 (197-255)||(30127273-30127332)
chr3 (217-272)||(47235729-47235784)
chr3 (197-255)||(2782081-2782139)
chr3 (201-267)||(37123397-37123463)
chr3 (201-267)||(39021276-39021342)
chr3 (211-255)||(25647709-25647753)
chr3 (184-232)||(31482882-31482930)
[»] chr5 (14 HSPs)
chr5 (184-267)||(34378096-34378179)
chr5 (184-267)||(18593241-18593324)
chr5 (184-272)||(698359-698447)
chr5 (197-255)||(7195251-7195309)
chr5 (197-267)||(13954234-13954304)
chr5 (197-246)||(33258903-33258952)
chr5 (198-246)||(39184208-39184256)
chr5 (197-267)||(22675324-22675394)
chr5 (197-246)||(7392052-7392101)
chr5 (209-264)||(26045967-26046022)
chr5 (201-251)||(21402853-21402903)
chr5 (197-267)||(27713080-27713150)
chr5 (197-267)||(29087492-29087562)
chr5 (216-264)||(8297498-8297546)
[»] chr6 (12 HSPs)
chr6 (194-272)||(3117501-3117579)
chr6 (184-264)||(16510304-16510384)
chr6 (200-267)||(20701803-20701870)
chr6 (197-264)||(32935342-32935409)
chr6 (211-255)||(32316393-32316437)
chr6 (197-244)||(26216042-26216089)
chr6 (200-267)||(21266127-21266194)
chr6 (197-244)||(26534742-26534789)
chr6 (201-252)||(34105428-34105479)
chr6 (197-250)||(7546446-7546499)
chr6 (197-246)||(9224052-9224101)
chr6 (197-241)||(34090374-34090418)
[»] scaffold0200 (1 HSPs)
scaffold0200 (197-267)||(19394-19464)
[»] scaffold0068 (1 HSPs)
scaffold0068 (194-267)||(35772-35844)
[»] scaffold0119 (1 HSPs)
scaffold0119 (197-265)||(42140-42208)
[»] scaffold0499 (1 HSPs)
scaffold0499 (197-264)||(6569-6637)
[»] scaffold1613 (1 HSPs)
scaffold1613 (197-246)||(1038-1087)
[»] scaffold0620 (1 HSPs)
scaffold0620 (197-252)||(3841-3896)
[»] scaffold0050 (1 HSPs)
scaffold0050 (197-252)||(36718-36773)
[»] scaffold0062 (1 HSPs)
scaffold0062 (211-255)||(71754-71798)


Alignment Details
Target: chr8 (Bit Score: 163; Significance: 5e-87; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 16458027 - 16457861
Alignment:
Q  18 agaaagaggagatgaaggaattgtaaaagccactccatttgaagatgatgtgtcaattgcttataatgaatagagctgctcatgcaatcttccatttata 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  16458027 agaaagaggagatgaaggaattgtaaaagccactccatttgaagatgatgtgtcaattgcttataatgaatagagctgctcatgcaatcttccatttaaa 16457928  T
Q  118 ggctaagtgtgtgtattttttcttaataaaataagaagggtgttgaagcatgaaacatgtgatggca 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16457927 ggctaagtgtgtgtattttttcttaataaaataagaagggtgttgaagcatgaaacatgtgatggca 16457861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 184 - 272
Target Start/End: Complemental strand, 24995478 - 24995390
Alignment:
Q  184 aatttgatactatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggctctgtg 272  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||    
T  24995478 aatttggtactatagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggctttgtg 24995390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 184 - 265
Target Start/End: Complemental strand, 31207445 - 31207364
Alignment:
Q  184 aatttgatactatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttggg 265  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||    
T  31207445 aatttggtactatagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggattttggg 31207364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 184 - 272
Target Start/End: Original strand, 9519497 - 9519585
Alignment:
Q  184 aatttgatactatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggctctgtg 272  Q
    |||||| ||||||||||| ||||| |||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||    
T  9519497 aatttggtactatagtctagtgggccgatcagttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggctttgtg 9519585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 184 - 272
Target Start/End: Complemental strand, 34389088 - 34389000
Alignment:
Q  184 aatttgatactatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggctctgtg 272  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||   ||| |||||||||||||||||||||||||||||| ||||    
T  34389088 aatttggtactatagtctggtgggccgatcacttttgattcgagatcaagagtcagttctttgactcaagttggtttttgggctttgtg 34389000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 184 - 272
Target Start/End: Complemental strand, 16457543 - 16457456
Alignment:
Q  184 aatttgatactatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggctctgtg 272  Q
    |||||||||||||||| ||||||  |||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||| ||||    
T  16457543 aatttgatactatagtttggtggc-cgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttaggctttgtg 16457456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 272
Target Start/End: Complemental strand, 32066378 - 32066290
Alignment:
Q  184 aatttgatactatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggctctgtg 272  Q
    |||||| | ||||||||||||||| |||||||||||||||||| ||||| ||| || |||||||||| |||||||||||||||| ||||    
T  32066378 aatttggtgctatagtctggtgggccgatcacttttgattcgaaatcgggagtcagctctttgactccagttggtttttgggctttgtg 32066290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 194 - 272
Target Start/End: Complemental strand, 37986931 - 37986853
Alignment:
Q  194 tatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggctctgtg 272  Q
    |||||||||||||| | |||| ||||||||||||||||| ||| |||||||||||||||||||||||||| ||| ||||    
T  37986931 tatagtctggtgggccaatcatttttgattcgagatcgggagtcagttctttgactcaagttggtttttgtgctttgtg 37986853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 184 - 267
Target Start/End: Original strand, 36630835 - 36630918
Alignment:
Q  184 aatttgatactatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    |||||| | ||| ||||||||||| ||||||||||| ||||||||||||  || ||||||||||||| |||| |||||||||||    
T  36630835 aatttggttctaaagtctggtgggccgatcacttttaattcgagatcgggtgtcagttctttgactctagtttgtttttgggct 36630918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 193 - 272
Target Start/End: Complemental strand, 41893474 - 41893396
Alignment:
Q  193 ctatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggctctgtg 272  Q
    ||||||||||||||| | | |||||||||||||||||||| ||| ||||||||| |||||||| ||||||||||| ||||    
T  41893474 ctatagtctggtgggccaaccacttttgattcgagatcgggagtcagttctttgtctcaagtt-gtttttgggctttgtg 41893396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 267
Target Start/End: Complemental strand, 15821449 - 15821379
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    |||||||||||  ||||||||||||||||||||||| ||| || ||||||||| | |||||||||||||||    
T  15821449 agtctggtgggctgatcacttttgattcgagatcgggagtcagctctttgacttatgttggtttttgggct 15821379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 267
Target Start/End: Complemental strand, 30236198 - 30236128
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    ||||||||||||||||| |||||||||||||||||| ||| |||||||||  ||||||| | |||||||||    
T  30236198 agtctggtgggacgatcgcttttgattcgagatcgggagtcagttctttggttcaagtttggttttgggct 30236128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 264
Target Start/End: Complemental strand, 17657068 - 17657005
Alignment:
Q  201 tggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgg 264  Q
    ||||||| |||||||||||||||||||||||| ||| ||||||||| |||||||| | ||||||    
T  17657068 tggtgggtcgatcacttttgattcgagatcgggagtcagttctttggctcaagtttggttttgg 17657005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 272
Target Start/End: Original strand, 20138449 - 20138512
Alignment:
Q  209 cgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggctctgtg 272  Q
    ||||||||||||||| |||||||| ||| |||||||||||| | ||||||||||||||| ||||    
T  20138449 cgatcacttttgatttgagatcgggagtcagttctttgacttatgttggtttttgggctttgtg 20138512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 267
Target Start/End: Original strand, 15906697 - 15906767
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    ||||||||||| ||||||| |||||||||||||||| ||| |||||||||  ||||||| | |||||||||    
T  15906697 agtctggtgggccgatcacatttgattcgagatcgggagtcagttctttggttcaagtttggttttgggct 15906767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 184 - 272
Target Start/End: Complemental strand, 12898357 - 12898269
Alignment:
Q  184 aatttgatactatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggctctgtg 272  Q
    |||||| || ||||||||||||   |||||||||||||||||||||| | ||| |||| | | ||||||||||||||| ||||| ||||    
T  12898357 aatttggtaatatagtctggtgacccgatcacttttgattcgagatccggagtcagttatctaactcaagttggttttggggctttgtg 12898269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 267
Target Start/End: Complemental strand, 32945760 - 32945703
Alignment:
Q  210 gatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    ||||||||||||||||||||||| ||| | |||||||| ||||||| | |||||||||    
T  32945760 gatcacttttgattcgagatcgggagtcaattctttgattcaagtttggttttgggct 32945703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 264
Target Start/End: Complemental strand, 38577840 - 38577793
Alignment:
Q  217 tttgattcgagatcggtagttagttctttgactcaagttggtttttgg 264  Q
    |||||||||||||||| |||||||||||||  | ||||||||||||||    
T  38577840 tttgattcgagatcgggagttagttctttggtttaagttggtttttgg 38577793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 10248611 - 10248565
Alignment:
Q  209 cgatcacttttgattcgagatcggtagttagttctttgactcaagtt 255  Q
    |||||||||||||||| ||||||| ||| ||||||||| ||||||||    
T  10248611 cgatcacttttgattcaagatcgggagtcagttctttggctcaagtt 10248565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 230
Target Start/End: Original strand, 33967337 - 33967370
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatc 230  Q
    ||||||||||| ||||||||||||||||||||||    
T  33967337 agtctggtgggccgatcacttttgattcgagatc 33967370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 40531243 - 40531292
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttg 246  Q
    |||||| |||| |||||||||||||||||||||||| || ||||| ||||    
T  40531243 agtctgatgggccgatcacttttgattcgagatcgggagctagttttttg 40531292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 544420 - 544376
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagtt 241  Q
    ||||||||||| |||||||||| ||||||||||||| || |||||    
T  544420 agtctggtgggtcgatcactttagattcgagatcggaagctagtt 544376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 6e-31; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 184 - 272
Target Start/End: Complemental strand, 31585843 - 31585755
Alignment:
Q  184 aatttgatactatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggctctgtg 272  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||    
T  31585843 aatttggtactatagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggctttgtg 31585755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 194 - 272
Target Start/End: Complemental strand, 46692892 - 46692814
Alignment:
Q  194 tatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggctctgtg 272  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||    
T  46692892 tatagtctggtgggccgatcacttttgattcgagatcgggagttagttctttggctcaagttggtttttgggctttgtg 46692814  T

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Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 184 - 272
Target Start/End: Original strand, 41920450 - 41920538
Alignment:
Q  184 aatttgatactatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggctctgtg 272  Q
    |||||| ||||| ||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||| ||||    
T  41920450 aatttggtactacagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggattttgggctttgtg 41920538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 184 - 272
Target Start/End: Complemental strand, 5389504 - 5389416
Alignment:
Q  184 aatttgatactatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggctctgtg 272  Q
    |||||| ||||||||||||  ||| |||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||| ||||    
T  5389504 aatttggtactatagtctgaagggccgatcacttttgattcgagatcgggagtcagttctttgactcaagtttgtttttgggctttgtg 5389416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 184 - 272
Target Start/End: Complemental strand, 30685987 - 30685899
Alignment:
Q  184 aatttgatactatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggctctgtg 272  Q
    |||||| ||||||||||| ||||| ||||||||||||||| |||||||| ||| |||||||||||||||||||| ||||||||| ||||    
T  30685987 aatttggtactatagtcttgtgggccgatcacttttgatttgagatcgggagtcagttctttgactcaagttggcttttgggctttgtg 30685899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 184 - 267
Target Start/End: Complemental strand, 24684561 - 24684478
Alignment:
Q  184 aatttgatactatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    |||||||| ||| ||||||||||| ||||||||||| ||||||||||||  || ||||||||||||| ||||||||||||||||    
T  24684561 aatttgattctaaagtctggtgggccgatcacttttaattcgagatcggatgtcagttctttgactctagttggtttttgggct 24684478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 184 - 272
Target Start/End: Original strand, 5459159 - 5459247
Alignment:
Q  184 aatttgatactatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggctctgtg 272  Q
    |||||| | ||||||||||||||| |||||||||||||||||||||||| ||| | || ||||| |||||||| |||||||||| ||||    
T  5459159 aatttggtgctatagtctggtgggccgatcacttttgattcgagatcgggagtcaattatttgattcaagttgatttttgggctttgtg 5459247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 265
Target Start/End: Complemental strand, 24450011 - 24449932
Alignment:
Q  186 tttgatactatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttggg 265  Q
    |||| ||||||||| ||||||| ||||||||||||||| |||||||| ||| ||||||||| || |||||||||||||||    
T  24450011 tttggtactatagtttggtgggccgatcacttttgatttgagatcggaagtcagttctttgtcttaagttggtttttggg 24449932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 267
Target Start/End: Original strand, 24658940 - 24659010
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    ||||||||||| | |||||||||||||||||||||| ||| || |||||| || |||||||||||||||||    
T  24658940 agtctggtgggccaatcacttttgattcgagatcgggagtcagctctttggctgaagttggtttttgggct 24659010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 267
Target Start/End: Complemental strand, 46814537 - 46814467
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    ||||||||||| |||||||||||||||||||||||| ||| || | |||| ||||||||||||||| ||||    
T  46814537 agtctggtgggccgatcacttttgattcgagatcgggagtcagctttttggctcaagttggttttttggct 46814467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 184 - 265
Target Start/End: Complemental strand, 20113604 - 20113523
Alignment:
Q  184 aatttgatactatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttggg 265  Q
    |||||| || ||||||||| ||||||||||| ||||||||| ||||||| | | |||||||| ||| |||||||||||||||    
T  20113604 aatttggtattatagtctgctgggacgatcatttttgattcaagatcgggaatcagttctttaacttaagttggtttttggg 20113523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 197 - 265
Target Start/End: Original strand, 19598647 - 19598715
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttggg 265  Q
    ||||||||||| ||||| |||||||||||||||||  ||| |||||||||||||||||| | |||||||    
T  19598647 agtctggtgggccgatcgcttttgattcgagatcgagagtcagttctttgactcaagtttgattttggg 19598715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 17033593 - 17033655
Alignment:
Q  193 ctatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagtt 255  Q
    ||||||||||||||| ||||||||||||| |||||||||| ||| |||||||||  |||||||    
T  17033593 ctatagtctggtgggccgatcacttttgaatcgagatcgggagtcagttctttggttcaagtt 17033655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 197 - 261
Target Start/End: Complemental strand, 27031910 - 27031846
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttt 261  Q
    ||||| ||||| |||||||||||||||||||||||  ||| || |||||| ||||||||||||||    
T  27031910 agtctagtgggccgatcacttttgattcgagatcgagagtcagctctttggctcaagttggtttt 27031846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 264
Target Start/End: Original strand, 7857664 - 7857731
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgg 264  Q
    ||||||||||| |||||||||||||||||||||||| ||| |  |||||  || ||||||||||||||    
T  7857664 agtctggtgggccgatcacttttgattcgagatcgggagtcaactcttttgctgaagttggtttttgg 7857731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 267
Target Start/End: Complemental strand, 32864628 - 32864561
Alignment:
Q  200 ctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    |||||||| | ||||||||| |||||||||||| |||  ||||||||||||||||| | |||||||||    
T  32864628 ctggtgggccaatcacttttaattcgagatcggaagtcggttctttgactcaagtttggttttgggct 32864561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 267
Target Start/End: Original strand, 27102214 - 27102272
Alignment:
Q  209 cgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    |||||||||||||||||||||||| ||| |||||||||  ||||||| | |||||||||    
T  27102214 cgatcacttttgattcgagatcgggagtcagttctttggatcaagtttggttttgggct 27102272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 27905423 - 27905473
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttga 247  Q
    ||||||||||  |||||||||||||||||||||| | ||||||||||||||    
T  27905423 agtctggtggaccgatcacttttgattcgagatcagaagttagttctttga 27905473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 38544808 - 38544759
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttg 246  Q
    ||||||||||| ||||| |||||||||||||||||| ||| |||||||||    
T  38544808 agtctggtgggccgatcgcttttgattcgagatcgggagtcagttctttg 38544759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 15840982 - 15840924
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagtt 255  Q
    |||||||||||  ||||||||||||||||||||||| ||| ||||  |||| |||||||    
T  15840982 agtctggtgggctgatcacttttgattcgagatcgggagtcagtttcttgattcaagtt 15840924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 6583286 - 6583237
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttg 246  Q
    ||||||||||  |||||||||||||||||||||||| ||| | |||||||    
T  6583286 agtctggtggaccgatcacttttgattcgagatcggcagtcaattctttg 6583237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 9313359 - 9313310
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttg 246  Q
    ||||| |||||  ||||||||||||||||||||||| ||| |||||||||    
T  9313359 agtctagtgggctgatcacttttgattcgagatcgggagtcagttctttg 9313310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 184 - 272
Target Start/End: Original strand, 38306259 - 38306347
Alignment:
Q  184 aatttgatactatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggctctgtg 272  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||| ||||    
T  38306259 aatttggtactatagtctggtgggccgatcacttttgattcgagattgggagtcagttctttgactcaagttggtttttgggctttgtg 38306347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 184 - 274
Target Start/End: Complemental strand, 47325968 - 47325878
Alignment:
Q  184 aatttgatactatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggctctgtgct 274  Q
    |||||| ||||||||||||||||| ||||| ||||||||| |||||||| ||| || ||||||||||||||||||||||||||| ||||||    
T  47325968 aatttggtactatagtctggtgggccgatcgcttttgatttgagatcgggagtcagctctttgactcaagttggtttttgggctttgtgct 47325878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 264
Target Start/End: Original strand, 10244180 - 10244260
Alignment:
Q  184 aatttgatactatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgg 264  Q
    |||||| | ||||| ||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||    
T  10244180 aatttggtgctataatctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagttagtttttgg 10244260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 184 - 267
Target Start/End: Complemental strand, 3419739 - 3419656
Alignment:
Q  184 aatttgatactatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    |||||| ||||| ||| |||||||  ||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||    
T  3419739 aatttggtactaaagtgtggtgggctgatcacttttgattcgagatcgggagtcagctctttgactcaagttggtttttgggct 3419656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 184 - 266
Target Start/End: Original strand, 33435107 - 33435189
Alignment:
Q  184 aatttgatactatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggc 266  Q
    |||||| ||||| ||||||||| |||||||||||||||||||||||||| ||| ||||||||| |||||||| |||| |||||    
T  33435107 aatttggtactaaagtctggtgagacgatcacttttgattcgagatcgggagtcagttctttgtctcaagttcgtttgtgggc 33435189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 184 - 272
Target Start/End: Complemental strand, 5860371 - 5860283
Alignment:
Q  184 aatttgatactatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggctctgtg 272  Q
    |||||| |||||||||| |||||| | ||| |||||||||||||||||| ||| | ||||||||| |||||||||||||||||| ||||    
T  5860371 aatttggtactatagtccggtgggcctatcgcttttgattcgagatcgggagtcaattctttgacgcaagttggtttttgggctttgtg 5860283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 184 - 272
Target Start/End: Original strand, 37794987 - 37795075
Alignment:
Q  184 aatttgatactatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggctctgtg 272  Q
    |||||| || |||||| ||||||| || ||| ||||||||||||||||| ||| |||||||||| ||||||||||||||||||| ||||    
T  37794987 aatttggtaatatagtatggtgggccgttcagttttgattcgagatcgggagtcagttctttgagtcaagttggtttttgggctttgtg 37795075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 267
Target Start/End: Original strand, 3867114 - 3867197
Alignment:
Q  184 aatttgatactatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    |||||| ||||| | | |||||||  ||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||    
T  3867114 aatttggtactaaaatatggtgggctgatcacttttgattcgagaccgggagtcagttctttgactcaagttggtttttgggct 3867197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 263
Target Start/End: Complemental strand, 41089831 - 41089752
Alignment:
Q  184 aatttgatactatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttg 263  Q
    |||||| ||||| ||||||||||  ||||||||||||||||||||| || ||| || |||||||||||||||||||||||    
T  41089831 aatttggtactaaagtctggtggaccgatcacttttgattcgagattgggagtcagctctttgactcaagttggtttttg 41089752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 197 - 267
Target Start/End: Original strand, 6584920 - 6584990
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    ||||||||||| |||||||||||||||||||||||| ||| || |||||| || |||||||||||||||||    
T  6584920 agtctggtgggccgatcacttttgattcgagatcgggagtcagctctttggcttaagttggtttttgggct 6584990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 197 - 267
Target Start/End: Original strand, 34389973 - 34390043
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    ||||||||||| |||||||||||||||||||||||| ||| || |||||| || |||||||||||||||||    
T  34389973 agtctggtgggccgatcacttttgattcgagatcgggagtcagctctttggcttaagttggtttttgggct 34390043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 3478367 - 3478419
Alignment:
Q  201 tggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaag 253  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||| ||||||    
T  3478367 tggtgggccgatcacttttgattcgagatcgggagttagttctttggctcaag 3478419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 255
Target Start/End: Original strand, 13311849 - 13311908
Alignment:
Q  196 tagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagtt 255  Q
    |||||||||||| |||||||||||||||||||||||| ||| |||||||||  |||||||    
T  13311849 tagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggttcaagtt 13311908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 272
Target Start/End: Complemental strand, 44353622 - 44353559
Alignment:
Q  209 cgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggctctgtg 272  Q
    ||||||||||||||| |||||||| ||| |||||||||||| | ||||||||||||||| ||||    
T  44353622 cgatcacttttgatttgagatcgggagtcagttctttgacttatgttggtttttgggctttgtg 44353559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 6716806 - 6716748
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagtt 255  Q
    |||||||| || |||||||||||||||||||||||| ||| ||||||||| ||||||||    
T  6716806 agtctggttggccgatcacttttgattcgagatcgggagtcagttctttggctcaagtt 6716748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 267
Target Start/End: Complemental strand, 35745897 - 35745827
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    |||||| ||||  ||||||||||||||||||||||| ||| |  |||||| ||||||||||||||||||||    
T  35745897 agtctgatgggctgatcacttttgattcgagatcggaagtcatctctttggctcaagttggtttttgggct 35745827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 1320805 - 1320863
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagtt 255  Q
    ||||||||||| |||||||||||||||| | ||||| ||| ||||||||| ||||||||    
T  1320805 agtctggtgggccgatcacttttgattcaaaatcggaagtcagttctttggctcaagtt 1320863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 46262189 - 46262136
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactc 250  Q
    ||||||||||| |||||||||||||||||||||||| || |||||  |||||||    
T  46262189 agtctggtgggccgatcacttttgattcgagatcgggagctagtttcttgactc 46262136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 267
Target Start/End: Original strand, 8745166 - 8745234
Alignment:
Q  199 tctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    ||||||||| |||||||||||||||||||||||| | | ||||| |||  ||||||| | |||||||||    
T  8745166 tctggtgggccgatcacttttgattcgagatcgggattcagttcgttggatcaagtttggttttgggct 8745234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 264
Target Start/End: Original strand, 12480901 - 12480965
Alignment:
Q  201 tggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaag-ttggtttttgg 264  Q
    ||||||| ||||| |||||||||||||||||| ||| |||||||||  ||||| |||||||||||    
T  12480901 tggtgggccgatcgcttttgattcgagatcgggagtcagttctttggttcaagtttggtttttgg 12480965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 232
Target Start/End: Original strand, 9349760 - 9349795
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcgg 232  Q
    ||||||||||| ||||||||||||||||||||||||    
T  9349760 agtctggtgggccgatcacttttgattcgagatcgg 9349795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 267
Target Start/End: Original strand, 25160813 - 25160896
Alignment:
Q  184 aatttgatactatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    |||||| | ||||||||||||||  |||| ||||||||||||||||||| ||| |  ||||  | | |||||||||||||||||    
T  25160813 aatttggttctatagtctggtggaccgattacttttgattcgagatcggaagtcaaatcttgaaattaagttggtttttgggct 25160896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 232
Target Start/End: Original strand, 38485567 - 38485602
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcgg 232  Q
    ||||||||||| ||||||||||||||||||||||||    
T  38485567 agtctggtgggccgatcacttttgattcgagatcgg 38485602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 264
Target Start/End: Complemental strand, 48058724 - 48058657
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgg 264  Q
    ||||||||||| ||||| ||||||||| |||||||| ||| |||| |||| |||||||| | ||||||    
T  48058724 agtctggtgggtcgatcgcttttgatttgagatcggaagtcagttttttggctcaagtttggttttgg 48058657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 16829006 - 16828948
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagtt 255  Q
    |||||||| ||  ||||||||||| ||||||||||  ||| ||||||||||||||||||    
T  16829006 agtctggttggctgatcacttttgtttcgagatcgaaagtcagttctttgactcaagtt 16828948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 255
Target Start/End: Original strand, 16954676 - 16954722
Alignment:
Q  209 cgatcacttttgattcgagatcggtagttagttctttgactcaagtt 255  Q
    |||||||||||| ||||||||||  ||| ||||||||||||||||||    
T  16954676 cgatcacttttgtttcgagatcgaaagtcagttctttgactcaagtt 16954722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 232
Target Start/End: Complemental strand, 17802885 - 17802851
Alignment:
Q  198 gtctggtgggacgatcacttttgattcgagatcgg 232  Q
    |||||||||| ||||||||||||||||||||||||    
T  17802885 gtctggtgggccgatcacttttgattcgagatcgg 17802851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 255
Target Start/End: Complemental strand, 24324864 - 24324810
Alignment:
Q  201 tggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagtt 255  Q
    ||||||| |||||| ||||||||||||||||| ||| | ||||||| ||||||||    
T  24324864 tggtgggccgatcaattttgattcgagatcgggagtcaattctttggctcaagtt 24324810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 2613923 - 2613879
Alignment:
Q  211 atcacttttgattcgagatcggtagttagttctttgactcaagtt 255  Q
    |||||||||||||||||||||| ||||||| | |||| |||||||    
T  2613923 atcacttttgattcgagatcggaagttagtgccttgattcaagtt 2613879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 9428176 - 9428128
Alignment:
Q  196 tagtctggtgggacgatcacttttgattcgagatcggtagttagttctt 244  Q
    |||||||||| | |||||||||||||||||||||| | ||| |||||||    
T  9428176 tagtctggtgagccgatcacttttgattcgagatcagaagtcagttctt 9428128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 27993606 - 27993562
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagtt 241  Q
    ||||||||||  |||||||||||||||||||||||| || |||||    
T  27993606 agtctggtggaccgatcacttttgattcgagatcgggagctagtt 27993562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 35206763 - 35206719
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagtt 241  Q
    ||||||||||| |||||||||||||| ||||||||| || |||||    
T  35206763 agtctggtgggccgatcacttttgatccgagatcgggagctagtt 35206719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 184 - 272
Target Start/End: Original strand, 4305723 - 4305811
Alignment:
Q  184 aatttgatactatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggctctgtg 272  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||| ||||    
T  4305723 aatttggtactatagtctggtggggcgatcacttttgattcgagatcgggagttagttctttgtctcaagttggtttttaggctttgtg 4305811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 184 - 267
Target Start/End: Original strand, 8255025 - 8255108
Alignment:
Q  184 aatttgatactatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    |||||| ||||| ||||||||||| |||||||||||||| ||||||| | ||| ||||||||||||||||||||||||||||||    
T  8255025 aatttggtactaaagtctggtgggccgatcacttttgatccgagatcagaagtcagttctttgactcaagttggtttttgggct 8255108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 184 - 267
Target Start/End: Original strand, 8268443 - 8268526
Alignment:
Q  184 aatttgatactatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    |||||| ||||| ||||||||||| |||||||||||||| ||||||| | ||| ||||||||||||||||||||||||||||||    
T  8268443 aatttggtactaaagtctggtgggccgatcacttttgatccgagatcagaagtcagttctttgactcaagttggtttttgggct 8268526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 184 - 265
Target Start/End: Original strand, 30964439 - 30964520
Alignment:
Q  184 aatttgatactatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttggg 265  Q
    |||||| ||||||| |||| |||| ||||||||||||||||| |||||| |||  |||||||||||||||||||||||||||    
T  30964439 aatttggtactataatctgatgggccgatcacttttgattcgtgatcgggagtccgttctttgactcaagttggtttttggg 30964520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 197 - 267
Target Start/End: Original strand, 25753183 - 25753253
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    ||||||||||| |||||||||||||||||||||||| ||| ||||||||| |||||||| | |||||||||    
T  25753183 agtctggtggggcgatcacttttgattcgagatcgggagtcagttctttggctcaagtttgattttgggct 25753253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 185 - 265
Target Start/End: Complemental strand, 30167646 - 30167566
Alignment:
Q  185 atttgatactatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttggg 265  Q
    ||||| || |||||||  ||||| |||||||||||||||||||||||| |||  |||||||||||||||||| ||||||||    
T  30167646 atttggtattatagtcaagtgggtcgatcacttttgattcgagatcgggagtcggttctttgactcaagttgatttttggg 30167566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 267
Target Start/End: Complemental strand, 31050732 - 31050662
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    ||||||||||| |||||||||||||||||||||||| |||||| ||||||  |  ||||||||||||||||    
T  31050732 agtctggtgggccgatcacttttgattcgagatcggaagttaggtctttggtttgagttggtttttgggct 31050662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 41118040 - 41117967
Alignment:
Q  194 tatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    |||||||||| |||| ||||||||||||||||||||||| ||| ||||||||| ||||| || | |||||||||    
T  41118040 tatagtctggagggaagatcacttttgattcgagatcggaagtaagttctttggctcaaattaggttttgggct 41117967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 197 - 265
Target Start/End: Complemental strand, 53823491 - 53823423
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttggg 265  Q
    ||||||||||  | |||||||||||||||||||||| ||| ||||||||| |||||||| | |||||||    
T  53823491 agtctggtggaccaatcacttttgattcgagatcgggagtcagttctttggctcaagtttggttttggg 53823423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 261
Target Start/End: Complemental strand, 38637305 - 38637238
Alignment:
Q  194 tatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttt 261  Q
    |||||||||| ||| |||||||||||||||||||||||| ||| | ||||||| || |||| ||||||    
T  38637305 tatagtctggcgggccgatcacttttgattcgagatcgggagtcaattctttggcttaagtaggtttt 38637238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 21387274 - 21387216
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagtt 255  Q
    ||||||||||  |||||||||||||||||||||||| ||| ||||||| || |||||||    
T  21387274 agtctggtggaccgatcacttttgattcgagatcggaagtcagttcttcgattcaagtt 21387216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 22811230 - 22811172
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagtt 255  Q
    ||||||||||| |||||| |||| |||||||||||| ||| ||||||||| ||||||||    
T  22811230 agtctggtgggccgatcattttttattcgagatcgggagtcagttctttggctcaagtt 22811172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 267
Target Start/End: Original strand, 38929838 - 38929908
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    |||||| |||| ||||||||||||||||||||||   ||| ||||||||| |||||||| | |||||||||    
T  38929838 agtctgctgggccgatcacttttgattcgagatcaagagtcagttctttggctcaagtttgattttgggct 38929908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 257
Target Start/End: Complemental strand, 36962685 - 36962626
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttgg 257  Q
    ||||||||||| |||| ||||||||||||||||| | ||| || |||||||||||||||||    
T  36962685 agtctggtgggccgattacttttgattcgagatcaggagtcag-tctttgactcaagttgg 36962626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 267
Target Start/End: Complemental strand, 46698856 - 46698784
Alignment:
Q  196 tagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaag-ttggtttttgggct 267  Q
    |||||||||||| ||||  |||||||||||||||||| ||| |||||||||  ||||| || |||||||||||    
T  46698856 tagtctggtgggccgattgcttttgattcgagatcgggagtcagttctttggttcaagttttgtttttgggct 46698784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 53756767 - 53756811
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagtt 241  Q
    ||||||||||| |||||||||||||||||||||||| || |||||    
T  53756767 agtctggtgggccgatcacttttgattcgagatcggaagctagtt 53756811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 256
Target Start/End: Complemental strand, 39041344 - 39041285
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttg 256  Q
    ||||||||||| |||||||||||||||||||||| | ||| ||||  | |||||||||||    
T  39041344 agtctggtgggccgatcacttttgattcgagatcaggagtcagtttctagactcaagttg 39041285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 232
Target Start/End: Complemental strand, 40813851 - 40813816
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcgg 232  Q
    ||||||||||| ||||||||||||||||||||||||    
T  40813851 agtctggtgggccgatcacttttgattcgagatcgg 40813816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 2792332 - 2792286
Alignment:
Q  209 cgatcacttttgattcgagatcggtagttagttctttgactcaagtt 255  Q
    |||||||||||||||||||||||| ||| ||||  ||||||||||||    
T  2792332 cgatcacttttgattcgagatcggaagtcagtttcttgactcaagtt 2792286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 6600015 - 6599957
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagtt 255  Q
    ||||||||||| ||||| ||||||||| |||||||| |||  ||||||||| |||||||    
T  6600015 agtctggtgggccgatcgcttttgattagagatcgggagtcggttctttgattcaagtt 6599957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 267
Target Start/End: Original strand, 28966878 - 28966948
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    |||||||| || |||||  |||||||||||||| || ||| ||||||||| |||||||| | |||||||||    
T  28966878 agtctggtagggcgatcgtttttgattcgagattgggagtcagttctttggctcaagtttggttttgggct 28966948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 264
Target Start/End: Complemental strand, 35341391 - 35341341
Alignment:
Q  214 acttttgattcgagatcggtagttagttctttgactcaagttggtttttgg 264  Q
    ||||||||| ||||||||| ||| || |||||| |||||||||||||||||    
T  35341391 acttttgatccgagatcggaagtcagctctttggctcaagttggtttttgg 35341341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 267
Target Start/End: Original strand, 35800512 - 35800570
Alignment:
Q  209 cgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    ||||| |||||||||||||||||| ||| |||||||||| || |||| | |||||||||    
T  35800512 cgatcgcttttgattcgagatcggaagtcagttctttgattccagtttggttttgggct 35800570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 232
Target Start/End: Complemental strand, 39421086 - 39421048
Alignment:
Q  194 tatagtctggtgggacgatcacttttgattcgagatcgg 232  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  39421086 tatagcctggtgggccgatcacttttgattcgagatcgg 39421048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 2061820 - 2061759
Alignment:
Q  185 atttgatactatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttg 246  Q
    ||||||| ||| |||||||||||  |||||||||||||||||||| |  ||| |||||||||    
T  2061820 atttgatcctaaagtctggtgggctgatcacttttgattcgagattgagagtcagttctttg 2061759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 230
Target Start/End: Complemental strand, 37707425 - 37707392
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatc 230  Q
    ||||||||||| ||||||||||||||||||||||    
T  37707425 agtctggtgggccgatcacttttgattcgagatc 37707392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 26474851 - 26474891
Alignment:
Q  201 tggtgggacgatcacttttgattcgagatcggtagttagtt 241  Q
    ||||||| |||||||||||||||||||||||  ||||||||    
T  26474851 tggtgggccgatcacttttgattcgagatcgagagttagtt 26474891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 184 - 272
Target Start/End: Complemental strand, 39338948 - 39338860
Alignment:
Q  184 aatttgatactatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggctctgtg 272  Q
    |||||| ||||||||||||||||| ||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||    
T  39338948 aatttggtactatagtctggtgggccgatcgcttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggctttgtg 39338860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 197 - 267
Target Start/End: Original strand, 7874302 - 7874372
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    ||||||||||| |||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||    
T  7874302 agtctggtgggtcgatcacttttgattcgagatcgggagtcagctctttgactcaagttggtttttgggct 7874372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 197 - 267
Target Start/End: Original strand, 14405209 - 14405279
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    ||||||||||| |||||||||||||||||||||||| ||| || |||||| ||||||||||||||||||||    
T  14405209 agtctggtgggccgatcacttttgattcgagatcgggagtcagctctttggctcaagttggtttttgggct 14405279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 183 - 272
Target Start/End: Original strand, 10524094 - 10524187
Alignment:
Q  183 caatttgatactatagtctggtgggacgatcacttttgattcgagatcggtagtta----gttctttgactcaagttggtttttgggctctgtg 272  Q
    ||||||| | ||||||||||||||| |||||||||||||||||||||||| ||| |     |||||||||||||||||||||||||||| ||||    
T  10524094 caatttggtgctatagtctggtgggccgatcacttttgattcgagatcgggagtcaatatattctttgactcaagttggtttttgggctttgtg 10524187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 263
Target Start/End: Original strand, 387171 - 387250
Alignment:
Q  184 aatttgatactatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttg 263  Q
    |||||| ||||| |||||||||||  |||||||||||||| |||||||| ||| | ||||||||||||||||||||||||    
T  387171 aatttggtactaaagtctggtgggctgatcacttttgatttgagatcgggagtcaattctttgactcaagttggtttttg 387250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 265
Target Start/End: Original strand, 1269494 - 1269562
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttggg 265  Q
    ||||||||||| |||||||||||||||||||||||| ||| ||||||||| |||||||| | |||||||    
T  1269494 agtctggtgggccgatcacttttgattcgagatcggaagtcagttctttggctcaagtttggttttggg 1269562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 267
Target Start/End: Original strand, 4471934 - 4472004
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    ||||||||||| ||||| | |||||||||||||||| ||| |||||||||| ||||||| |||||||||||    
T  4471934 agtctggtgggccgatcgcctttgattcgagatcgggagtcagttctttgattcaagtttgtttttgggct 4472004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 197 - 265
Target Start/End: Complemental strand, 22885203 - 22885135
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttggg 265  Q
    ||||||||||| |||||||||||||||||||||||| ||| |||||||||  ||||||| | |||||||    
T  22885203 agtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggttcaagtttggttttggg 22885135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 264
Target Start/End: Original strand, 13337285 - 13337352
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgg 264  Q
    |||||| |||| |||||||||||||||||| ||||| ||| |||||||||||||||||| | ||||||    
T  13337285 agtctgatgggccgatcacttttgattcgaaatcggaagtcagttctttgactcaagttaggttttgg 13337352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 267
Target Start/End: Complemental strand, 10173648 - 10173578
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    ||||| ||||| |||||||||||||||||||||||| ||| |||| |||| |||||||| | |||||||||    
T  10173648 agtctagtgggccgatcacttttgattcgagatcggaagtaagttatttggctcaagtttggttttgggct 10173578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 267
Target Start/End: Original strand, 16959993 - 16960063
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    ||||||||||| ||||| |||||||||||||||||  ||| ||||||||| |||||||| | |||||||||    
T  16959993 agtctggtgggccgatcgcttttgattcgagatcgagagtcagttctttggctcaagtttggttttgggct 16960063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 267
Target Start/End: Complemental strand, 15126480 - 15126410
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    ||||||||||| |||||| ||||||||||||||||| |||  |||||||| |||| ||| | |||||||||    
T  15126480 agtctggtgggccgatcatttttgattcgagatcgggagtcggttctttggctcatgtttggttttgggct 15126410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 267
Target Start/End: Original strand, 2062901 - 2062970
Alignment:
Q  198 gtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    |||||||||| ||||  |||||||||||||||||| ||| || |||||| |||||||| | |||||||||    
T  2062901 gtctggtgggccgattgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggct 2062970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 232
Target Start/End: Complemental strand, 4162090 - 4162055
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcgg 232  Q
    ||||||||||| ||||||||||||||||||||||||    
T  4162090 agtctggtgggccgatcacttttgattcgagatcgg 4162055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 267
Target Start/End: Original strand, 7695986 - 7696044
Alignment:
Q  209 cgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    |||||||||||||||||| | ||| ||| ||||||||| |||||||| | |||||||||    
T  7695986 cgatcacttttgattcgataccgggagtcagttctttggctcaagttaggttttgggct 7696044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 251
Target Start/End: Complemental strand, 9560846 - 9560804
Alignment:
Q  209 cgatcacttttgattcgagatcggtagttagttctttgactca 251  Q
    |||||||||||||||||||||||| || ||||| |||||||||    
T  9560846 cgatcacttttgattcgagatcgggagctagttttttgactca 9560804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 33788702 - 33788653
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttg 246  Q
    ||||||||||| ||||| ||||||||||||||| || ||| |||||||||    
T  33788702 agtctggtgggccgatcgcttttgattcgagattgggagtcagttctttg 33788653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 245
Target Start/End: Complemental strand, 14106594 - 14106546
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttcttt 245  Q
    ||||||||||| |||||||||||||||| ||||||| ||| || |||||    
T  14106594 agtctggtgggccgatcacttttgattcaagatcgggagtcagctcttt 14106546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 255
Target Start/End: Original strand, 15723197 - 15723241
Alignment:
Q  211 atcacttttgattcgagatcggtagttagttctttgactcaagtt 255  Q
    |||||||||||||||||||||  |||||||||||||  |||||||    
T  15723197 atcacttttgattcgagatcgtcagttagttctttgtttcaagtt 15723241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 41086861 - 41086825
Alignment:
Q  194 tatagtctggtgggacgatcacttttgattcgagatc 230  Q
    |||||||||||||| | ||||||||||||||||||||    
T  41086861 tatagtctggtgggtcaatcacttttgattcgagatc 41086825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 194 - 272
Target Start/End: Original strand, 17550965 - 17551043
Alignment:
Q  194 tatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggctctgtg 272  Q
    |||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||    
T  17550965 tatagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggctttgtg 17551043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 184 - 267
Target Start/End: Original strand, 19176500 - 19176583
Alignment:
Q  184 aatttgatactatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    |||||| | ||| ||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  19176500 aatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggct 19176583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 184 - 267
Target Start/End: Complemental strand, 9584136 - 9584053
Alignment:
Q  184 aatttgatactatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    |||||||||||| ||||||||||  |||||||||||||||||||||||| ||| ||||||||| |||||| |||||||||||||    
T  9584136 aatttgatactaaagtctggtggatcgatcacttttgattcgagatcgggagtcagttctttgtctcaagatggtttttgggct 9584053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 184 - 263
Target Start/End: Original strand, 43012373 - 43012452
Alignment:
Q  184 aatttgatactatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttg 263  Q
    |||||| | ||| ||||||||||  |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  43012373 aatttggttctaaagtctggtggcccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttg 43012452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 184 - 272
Target Start/End: Complemental strand, 2392589 - 2392501
Alignment:
Q  184 aatttgatactatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggctctgtg 272  Q
    |||||| |||||||| |||||||  ||||||||||||||||||||| || ||| ||||||||| || ||||||||||||||||| ||||    
T  2392589 aatttggtactatagcctggtggaccgatcacttttgattcgagattggaagtcagttctttgtcttaagttggtttttgggctttgtg 2392501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 191 - 267
Target Start/End: Original strand, 20611788 - 20611864
Alignment:
Q  191 tactatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    ||||||||| || |||| |||||| ||||||||||||||||| ||| |||||||||||| |||||||||||||||||    
T  20611788 tactatagtttgttgggccgatcatttttgattcgagatcgggagtcagttctttgacttaagttggtttttgggct 20611864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 184 - 265
Target Start/End: Complemental strand, 2394336 - 2394255
Alignment:
Q  184 aatttgatactatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttggg 265  Q
    |||||| |||||||| |||||||  ||||||||||||||||||||| || ||| ||||||||| || |||||||||||||||    
T  2394336 aatttggtactatagcctggtggaccgatcacttttgattcgagattggaagtcagttctttgtcttaagttggtttttggg 2394255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 184 - 272
Target Start/End: Complemental strand, 34475837 - 34475749
Alignment:
Q  184 aatttgatactatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggctctgtg 272  Q
    |||||| | ||||||||||||||| |||||||||||||||||||||||| ||| |  |||| || | |||||| |||||||||| ||||    
T  34475837 aatttgtttctatagtctggtgggccgatcacttttgattcgagatcgggagtcaaatcttggaattaagttgatttttgggctttgtg 34475749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 272
Target Start/End: Original strand, 45163851 - 45163941
Alignment:
Q  184 aatttgatactatagtctggtg--ggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggctctgtg 272  Q
    |||||| ||||||||||| |||  || |||||||||||||||||||||| | ||| |||| |||| || ||||||||||||||||| ||||    
T  45163851 aatttggtactatagtcttgtgtgggccgatcacttttgattcgagatcagaagtcagttttttgtcttaagttggtttttgggctttgtg 45163941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 209 - 263
Target Start/End: Complemental strand, 23328408 - 23328354
Alignment:
Q  209 cgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttg 263  Q
    |||||||||||||||||||||||| |||||| | |||| ||||||||||||||||    
T  23328408 cgatcacttttgattcgagatcgggagttagctttttggctcaagttggtttttg 23328354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 267
Target Start/End: Complemental strand, 40023642 - 40023572
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    ||||||||||  |||||||||||||||||||||||| |||   ||||||| || |||||||||||||||||    
T  40023642 agtctggtggaccgatcacttttgattcgagatcgggagtcgattctttggcttaagttggtttttgggct 40023572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 267
Target Start/End: Original strand, 45398807 - 45398877
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    ||||||||||  |||||||||||||||||||||||  ||| || ||||||| | |||||||||||||||||    
T  45398807 agtctggtggaccgatcacttttgattcgagatcgagagtcagctctttgatttaagttggtttttgggct 45398877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 267
Target Start/End: Original strand, 47945717 - 47945787
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    |||| |||||| |||||||||||||||||||||||| ||| |||| |||| |||||||| | |||||||||    
T  47945717 agtccggtgggccgatcacttttgattcgagatcgggagtcagttatttggctcaagtttgattttgggct 47945787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 203 - 267
Target Start/End: Complemental strand, 1652950 - 1652886
Alignment:
Q  203 gtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    ||||| |||||||||||||||||||||| | |||||||||||||  ||||||| | |||||||||    
T  1652950 gtgggccgatcacttttgattcgagatcaggagttagttctttggttcaagtttggttttgggct 1652886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 255
Target Start/End: Original strand, 5556580 - 5556639
Alignment:
Q  196 tagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagtt 255  Q
    |||||||||||| ||||| |||||||||||||||||| ||| |||||||||  |||||||    
T  5556580 tagtctggtggggcgatcgcttttgattcgagatcgggagtcagttctttggttcaagtt 5556639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 267
Target Start/End: Complemental strand, 33144019 - 33143948
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaag-ttggtttttgggct 267  Q
    ||||||||||  |||||||||||||||||||||||| ||| |||||||||  ||||| || |||||||||||    
T  33144019 agtctggtggatcgatcacttttgattcgagatcgggagtcagttctttggatcaagattagtttttgggct 33143948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 19295935 - 19295877
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagtt 255  Q
    ||||||||||| | |||||||||||||||| ||||| ||||||||  ||||||||||||    
T  19295935 agtctggtgggcctatcacttttgattcgatatcggaagttagtttcttgactcaagtt 19295877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 14755335 - 14755286
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttg 246  Q
    ||||||||||| |||||||||||||||| ||||||| ||| |||||||||    
T  14755335 agtctggtgggccgatcacttttgattcaagatcgggagtcagttctttg 14755286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 20710778 - 20710734
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagtt 241  Q
    ||||||||||| |||||||||||||||||||||||| || |||||    
T  20710778 agtctggtgggccgatcacttttgattcgagatcgggagctagtt 20710734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 232
Target Start/End: Original strand, 14879446 - 14879481
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcgg 232  Q
    ||||||||||| ||||||||||||||||||||||||    
T  14879446 agtctggtgggccgatcacttttgattcgagatcgg 14879481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 30127273 - 30127332
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttct-ttgactcaagtt 255  Q
    ||||||||| | ||||| |||||||||||||||||| ||| |||||| ||||||||||||    
T  30127273 agtctggtgagccgatcgcttttgattcgagatcgggagtcagttctcttgactcaagtt 30127332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 272
Target Start/End: Original strand, 47235729 - 47235784
Alignment:
Q  217 tttgattcgagatcggtagttagttctttgactcaagttggtttttgggctctgtg 272  Q
    |||||||||||||||  |||  ||||||||||| ||||||||||||||||| ||||    
T  47235729 tttgattcgagatcgagagtcggttctttgacttaagttggtttttgggctttgtg 47235784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 2782139 - 2782081
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagtt 255  Q
    |||||||||||||||||||||||||||  ||||||| ||  |||| ||||||| |||||    
T  2782139 agtctggtgggacgatcacttttgattttagatcgggagccagttttttgactaaagtt 2782081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 267
Target Start/End: Original strand, 37123397 - 37123463
Alignment:
Q  201 tggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    ||||||| ||||||||||||||||||||| || ||| |||||||||  |||| || | |||||||||    
T  37123397 tggtgggccgatcacttttgattcgagattgggagtcagttctttggatcaaatttggttttgggct 37123463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 267
Target Start/End: Complemental strand, 39021342 - 39021276
Alignment:
Q  201 tggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    ||||||| ||||||||||||||||||| |||| ||| |||||||||  ||||||  | |||||||||    
T  39021342 tggtgggccgatcacttttgattcgaggtcgggagtcagttctttggatcaagtctggttttgggct 39021276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 255
Target Start/End: Original strand, 25647709 - 25647753
Alignment:
Q  211 atcacttttgattcgagatcggtagttagttctttgactcaagtt 255  Q
    |||||||||||||||||||||| |||| |||||||| || |||||    
T  25647709 atcacttttgattcgagatcgggagttggttctttggcttaagtt 25647753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 31482882 - 31482930
Alignment:
Q  184 aatttgatactatagtctggtgggacgatcacttttgattcgagatcgg 232  Q
    |||||| | ||||||||||| |||  |||||||||||||||||||||||    
T  31482882 aatttggttctatagtctggcgggcggatcacttttgattcgagatcgg 31482930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 184 - 267
Target Start/End: Original strand, 34378096 - 34378179
Alignment:
Q  184 aatttgatactatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    |||||| ||||| ||||||||||| |||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||    
T  34378096 aatttggtactaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgacacaagttggtttttgggct 34378179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 184 - 267
Target Start/End: Original strand, 18593241 - 18593324
Alignment:
Q  184 aatttgatactatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    |||||| | ||||||| | |||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18593241 aatttggtgctatagtttagtgggcagatcacttttgattcgagatcgggagttagttctttgactcaagttggtttttgggct 18593324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 184 - 272
Target Start/End: Original strand, 698359 - 698447
Alignment:
Q  184 aatttgatactatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggctctgtg 272  Q
    |||||| | ||||||||||||||  ||||| |||||||||||||||||| ||| |  ||||||||||||||||||||||||||| ||||    
T  698359 aatttggtgctatagtctggtggaccgatctcttttgattcgagatcgggagtcaactctttgactcaagttggtttttgggctttgtg 698447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 7195309 - 7195251
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagtt 255  Q
    ||||||||| | |||||||||||||||||||||||| ||| ||||||||| ||||||||    
T  7195309 agtctggtgagccgatcacttttgattcgagatcgggagtcagttctttggctcaagtt 7195251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 267
Target Start/End: Complemental strand, 13954304 - 13954234
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    ||||||||||| |||||||||||||||||||||||| ||| | | ||||| |||||||| | |||||||||    
T  13954304 agtctggtgggccgatcacttttgattcgagatcgggagtcattactttggctcaagtttggttttgggct 13954234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 33258952 - 33258903
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttg 246  Q
    ||||||||||| |||||||||||||||||||||| | |||||||||||||    
T  33258952 agtctggtgggccgatcacttttgattcgagatcaggagttagttctttg 33258903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 39184256 - 39184208
Alignment:
Q  198 gtctggtgggacgatcacttttgattcgagatcggtagttagttctttg 246  Q
    |||||||||| |||||||||||||||||||||||| ||| |||||||||    
T  39184256 gtctggtgggccgatcacttttgattcgagatcggaagtcagttctttg 39184208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 267
Target Start/End: Complemental strand, 22675394 - 22675324
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    ||||||||||  |||||  ||||||||||||||||| ||| ||||||||| |||||||| | |||||||||    
T  22675394 agtctggtggaccgatcgattttgattcgagatcgggagtcagttctttggctcaagtttggttttgggct 22675324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 7392101 - 7392052
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttg 246  Q
    ||||||||||  |||||||||||||||||||||||| ||| |||||||||    
T  7392101 agtctggtggaccgatcacttttgattcgagatcgggagtcagttctttg 7392052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 264
Target Start/End: Complemental strand, 26046022 - 26045967
Alignment:
Q  209 cgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgg 264  Q
    |||||||||||||||||||||||| |||||||  |||| |||||||| | ||||||    
T  26046022 cgatcacttttgattcgagatcgggagttagtgttttggctcaagtttggttttgg 26045967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 251
Target Start/End: Complemental strand, 21402903 - 21402853
Alignment:
Q  201 tggtgggacgatcacttttgattcgagatcggtagttagttctttgactca 251  Q
    ||||||| |||||||||||  ||||||||||| ||| ||||||||||||||    
T  21402903 tggtgggccgatcacttttagttcgagatcgggagtcagttctttgactca 21402853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 267
Target Start/End: Original strand, 27713080 - 27713150
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    ||||| ||||| |||||  ||||||||||||||||| | | ||||||||| |||||||| | |||||||||    
T  27713080 agtctagtgggccgatcgtttttgattcgagatcgggaatcagttctttggctcaagtttggttttgggct 27713150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 267
Target Start/End: Original strand, 29087492 - 29087562
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    ||||||||||   |||| |||||||||||||||| | ||| |||||||||| |||| ||||||| ||||||    
T  29087492 agtctggtggactgatcccttttgattcgagatcaggagtcagttctttgaatcaaattggtttctgggct 29087562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 8297498 - 8297546
Alignment:
Q  216 ttttgattcgagatcggtagttagttctttgactcaagttggtttttgg 264  Q
    ||||||||||||||||| ||| ||||||||| |||||||| | ||||||    
T  8297498 ttttgattcgagatcgggagtcagttctttggctcaagtttggttttgg 8297546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 194 - 272
Target Start/End: Original strand, 3117501 - 3117579
Alignment:
Q  194 tatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggctctgtg 272  Q
    |||||| ||||||| |||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||| ||||    
T  3117501 tatagtatggtgggccgatcacttttgattcaagatcgggagtcagttctttgactcaagttggtttttgggctttgtg 3117579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 184 - 264
Target Start/End: Complemental strand, 16510384 - 16510304
Alignment:
Q  184 aatttgatactatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgg 264  Q
    |||||| | ||| ||||| ||||| ||||||||||||||||||||| |  ||| |||||||| ||||||||||||||||||    
T  16510384 aatttggttctaaagtctagtgggccgatcacttttgattcgagattgagagtcagttcttttactcaagttggtttttgg 16510304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 267
Target Start/End: Complemental strand, 20701870 - 20701803
Alignment:
Q  200 ctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    |||||| | |||||||||||||||||||||||| ||||||||||||| || ||||| | |||||||||    
T  20701870 ctggtgtgccgatcacttttgattcgagatcgggagttagttctttggcttaagtttggttttgggct 20701803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 264
Target Start/End: Complemental strand, 32935409 - 32935342
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgg 264  Q
    ||||||||||| ||||| |||||||||||||||||| ||| ||||||| |||||||||| | ||||||    
T  32935409 agtctggtgggccgatcgcttttgattcgagatcgggagtcagttcttggactcaagtttgattttgg 32935342  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 211 - 255
Target Start/End: Original strand, 32316393 - 32316437
Alignment:
Q  211 atcacttttgattcgagatcggtagttagttctttgactcaagtt 255  Q
    |||||||||||||||||||||||||| |||||||||| |||||||    
T  32316393 atcacttttgattcgagatcggtagtaagttctttgattcaagtt 32316437  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 244
Target Start/End: Complemental strand, 26216089 - 26216042
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctt 244  Q
    ||||||||||| |||||||||||||||||||||||| ||| |||||||    
T  26216089 agtctggtgggccgatcacttttgattcgagatcgggagtcagttctt 26216042  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 200 - 267
Target Start/End: Original strand, 21266127 - 21266194
Alignment:
Q  200 ctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    |||||||| ||||| |||||||||||||||||| |||||||| | ||  ||||||| | |||||||||    
T  21266127 ctggtgggccgatcgcttttgattcgagatcgggagttagttatgtggttcaagtttggttttgggct 21266194  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 244
Target Start/End: Complemental strand, 26534789 - 26534742
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctt 244  Q
    ||||||||||| ||||||||||||||||||||| || ||| |||||||    
T  26534789 agtctggtgggccgatcacttttgattcgagattgggagtcagttctt 26534742  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 252
Target Start/End: Original strand, 34105428 - 34105479
Alignment:
Q  201 tggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaa 252  Q
    ||||||| |||||||||||||||||||||||| ||| ||||  |||||||||    
T  34105428 tggtgggccgatcacttttgattcgagatcgggagtcagtttcttgactcaa 34105479  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 7546499 - 7546446
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactc 250  Q
    ||||||||||  |||||||||||||||||||||||| || ||||| ||| ||||    
T  7546499 agtctggtggaccgatcacttttgattcgagatcggaagctagtttttttactc 7546446  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 9224052 - 9224101
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttg 246  Q
    |||||||||||  |||| |||||||||||||||||| ||| |||||||||    
T  9224052 agtctggtgggctgatcgcttttgattcgagatcgggagtcagttctttg 9224101  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 34090374 - 34090418
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagtt 241  Q
    ||||||||||| |||||| ||||||||||||||||| ||| ||||    
T  34090374 agtctggtgggtcgatcaattttgattcgagatcgggagtcagtt 34090418  T

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Target: scaffold0200 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 197 - 267
Target Start/End: Original strand, 19394 - 19464
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    ||||||||||| |||||||||||||||||||||||| ||| ||||||||| |||||||| | |||||||||    
T  19394 agtctggtgggccgatcacttttgattcgagatcggaagtcagttctttggctcaagtttggttttgggct 19464  T

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Target: scaffold0068 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 35844 - 35772
Alignment:
Q  194 tatagtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttgggct 267  Q
    |||||||| ||||| |||||||||||||||||||||||| ||| | |||||||||| |||||||||||||||||    
T  35844 tatagtctagtgggccgatcacttttgattcgagatcgggagtca-ttctttgacttaagttggtttttgggct 35772  T

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Target: scaffold0119 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 265
Target Start/End: Complemental strand, 42208 - 42140
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaagttggtttttggg 265  Q
    ||||||||||| |||||||||||||||||||||||| ||| ||||||||| |||||||| | |||||||    
T  42208 agtctggtgggccgatcacttttgattcgagatcggaagtcagttctttggctcaagtttggttttggg 42140  T

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Target: scaffold0499 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 197 - 264
Target Start/End: Original strand, 6569 - 6637
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaag-ttggtttttgg 264  Q
    |||||||||  |||||| |||||||||| |||| |||||||||||||||| |||||| |||||||||||    
T  6569 agtctggtgcaacgatctcttttgattcaagattggtagttagttctttggctcaagtttggtttttgg 6637  T

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Target: scaffold1613 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 1087 - 1038
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttg 246  Q
    ||||||||||| ||||| |||||||||||||||||| ||| |||||||||    
T  1087 agtctggtgggccgatcgcttttgattcgagatcgggagtcagttctttg 1038  T

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Target: scaffold0620 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 252
Target Start/End: Original strand, 3841 - 3896
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaa 252  Q
    ||||||||||| |||||| ||||||||||||||||| ||| ||||  |||||||||    
T  3841 agtctggtgggccgatcaattttgattcgagatcgggagtcagtttcttgactcaa 3896  T

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Target: scaffold0050 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 252
Target Start/End: Original strand, 36718 - 36773
Alignment:
Q  197 agtctggtgggacgatcacttttgattcgagatcggtagttagttctttgactcaa 252  Q
    ||||||| |||  ||||||||||||||||||||||| ||| ||||||||| |||||    
T  36718 agtctggcgggctgatcacttttgattcgagatcgggagtcagttctttgtctcaa 36773  T

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Target: scaffold0062 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 255
Target Start/End: Original strand, 71754 - 71798
Alignment:
Q  211 atcacttttgattcgagatcggtagttagttctttgactcaagtt 255  Q
    |||||||||||||||||||||  |||||||||||||  |||||||    
T  71754 atcacttttgattcgagatcgtcagttagttctttgtttcaagtt 71798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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