View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9786_low_17 (Length: 241)
Name: NF9786_low_17
Description: NF9786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9786_low_17 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 36570866 - 36570643
Alignment:
| Q |
18 |
acaactcaattgaatggcgttcacactcttctgcactccgtcgctatgttcttcttcctcttctactatgttttctactcctcttaaattatccttaaaa |
117 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36570866 |
acaactcaattgaatggcgtccacactcttctgcactccgtcgctatgttcttcttcctcttctactatgttttctactcctcttaaattatccttaaaa |
36570767 |
T |
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| Q |
118 |
cccagcggcgtctcccttcaaaacaaaacccccctttcacttcccaccactcaaagacgctttaaaatcactgccatggctcctcccaaacccggtggtg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36570766 |
cccagcggcgtctcccttcaaaacaaaacccccctttcacttcccaccactcaaagacgctttaaaatcactgccatggctcctcccaaacccggtggtg |
36570667 |
T |
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| Q |
218 |
gcaaagcaaagaaaggtactaaac |
241 |
Q |
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|||||||||||||||||||||||| |
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| T |
36570666 |
gcaaagcaaagaaaggtactaaac |
36570643 |
T |
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