View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9786_low_19 (Length: 231)
Name: NF9786_low_19
Description: NF9786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9786_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 3 - 216
Target Start/End: Original strand, 13856033 - 13856238
Alignment:
| Q |
3 |
aacagtggaaaaatctaattaatcttggaatacaataatactatatgaaaatattgatattgataaagtacattgcatggtttgcatcattttacgaaga |
102 |
Q |
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| T |
13856033 |
aacagtggaaaaatctaattaatcttggaata--------ctatatgaaaatattaatattgataaagtacattgcatggtttgcatcattttatgaaga |
13856124 |
T |
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| Q |
103 |
tgcaaatgtttgcttgtccttggcattcaaatgttcggtctcatttatagagatatatgagcaatttgatgatttgatttgaagtcagtgtcatttaatg |
202 |
Q |
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| T |
13856125 |
tgcaaatgtttgcttgtccttggcattcaaatgttcggtctcatttatagagatatataagcaatttgatgatttgatttgaagtcagtgtcatttaatg |
13856224 |
T |
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| Q |
203 |
cctagctggcctat |
216 |
Q |
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| T |
13856225 |
cctagctggcctat |
13856238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 3 - 156
Target Start/End: Original strand, 13873344 - 13873498
Alignment:
| Q |
3 |
aacagtggaaaa-atctaattaatcttggaatacaataatactatatgaaaatattgatattgataaagtacattgcatggtttgcatcattttacgaag |
101 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||| |||| |||| |
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| T |
13873344 |
aacagtggaaaagatctaattaatcttggaatacaataatactatatgaaaatattgatatttgtaaagttcattgcattgtttgcatcactttatgaag |
13873443 |
T |
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| Q |
102 |
atgcaaatgtttgcttgtccttggcattcaaatgttcggtctcatttatagagat |
156 |
Q |
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| T |
13873444 |
atgcaaatgttcgcttgtccttagccttcaaatgttggttctcatttatatagat |
13873498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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