View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9786_low_2 (Length: 668)
Name: NF9786_low_2
Description: NF9786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9786_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 626; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 626; E-Value: 0
Query Start/End: Original strand, 1 - 654
Target Start/End: Complemental strand, 49941907 - 49941254
Alignment:
| Q |
1 |
ttctctagaaaagcaaccgagccattgcttatgcactgtatttttattgttcaccaaacaatacttatattaaaagtgtcacatgactaatgagctttat |
100 |
Q |
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| T |
49941907 |
ttctctagaaaagcaaccgagccattgcttatgcactgtatttttattgttcaccaaacaatacttatattaaaagtgtcacatgactaatgagctttat |
49941808 |
T |
|
| Q |
101 |
attcattaggtaattttctatcataaagaaataatgcatatgaaatattagaaaatctacatatgaagttgaacattctgtgttgattttccttcctttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
49941807 |
attcattaggtaattttctatcataaagaaataatgcatatgaaatattagaaaatctacatatgaagttaaacattctatgttgattttccttcctttg |
49941708 |
T |
|
| Q |
201 |
tcaaaggaggttaagctgtaaataagcattttcaaagatgatttaaatagctttcaaggtgatcaaatagtttggtttttccagaacatatcagcaagtt |
300 |
Q |
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| T |
49941707 |
tcaaaagaggttaagccgtaaataagcattttcaaagatgatttaaatagctttcaaggtgatcaaatagtttggtttttccagaacatatcagcaagtt |
49941608 |
T |
|
| Q |
301 |
tgtgttttcgtgttcaaagaatatttttacacaatgcatgtggctggtttggcagcatccctctagaagcatcaggagattttggcattcaccctgagaa |
400 |
Q |
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| T |
49941607 |
tgtgttttcgtgttcaaagaatatttttacacaatgcatgtggctggtttggcagcatccctctagaagcatcaggagattttggcattcaccctgagaa |
49941508 |
T |
|
| Q |
401 |
aggagaattaaatattatgtgccaggtacttatgatcatatttatgcttgtttacttattgtataattatttatttgtggaagcacttgttaagcaattc |
500 |
Q |
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| T |
49941507 |
aggagaattaaatattatgtgccaggtacttataatcatgtttatgtttgtttacttattgtataattatttatttgtggaagcacttgttaagcaattc |
49941408 |
T |
|
| Q |
501 |
caaaatcacttttttggaaggtagagataatatttcactaccggaaagttcttttgtaaattggagtcacaaatcacagtagacttgtttccagatgcaa |
600 |
Q |
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| T |
49941407 |
caaaatcacttttttggaaggtagagataatatttcactaccggaaagttcttttgtaaattggagtcacaaatcacagtagacttgtttccagatgcaa |
49941308 |
T |
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| Q |
601 |
ttctgtcaaaaatcacatatgttgggaagttgggtttaagttattctctgatgt |
654 |
Q |
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| T |
49941307 |
ttctgtcaaaaatcacatatgttgggaagttgggtttaagttattctctgatgt |
49941254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 8e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 282 - 431
Target Start/End: Original strand, 1906838 - 1906987
Alignment:
| Q |
282 |
cagaacatatcagcaagtttgtgttttcgtgttcaaagaatatttttacacaatgcatgtggctggtttggcagcatccctctagaagcatcaggagatt |
381 |
Q |
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|||||||||||| | ||||| |||||||| | ||||||||||||||||||||||||| |||| |||||||||| | |||||||||||||||||||| | |
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| T |
1906838 |
cagaacatatcaacgagtttatgttttcgcggtcaaagaatatttttacacaatgcaaatggccggtttggcagtgttcctctagaagcatcaggagact |
1906937 |
T |
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| Q |
382 |
ttggcattcaccctgagaaaggagaattaaatattatgtgccaggtactt |
431 |
Q |
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| T |
1906938 |
ttggcattcatcccgaagaaggagagttccatcttatgtgtcaggtactt |
1906987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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